Cluster: Rep_450_CGC44
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_03937
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_450_c_1 | Rep_450_c_1_270 | 315081 | 316358 | + | 1.I.1.1.3 |
| pfam | Rep_450_c_1 | Rep_450_c_1_271 | 316561 | 318114 | - | Lcl_C |
| TC | Rep_450_c_1 | Rep_450_c_1_272 | 318273 | 318749 | - | 3.D.1.5.1 |
| STP | Rep_450_c_1 | Rep_450_c_1_273 | 318770 | 320536 | - | Fer4 |
| TC | Rep_450_c_1 | Rep_450_c_1_274 | 320598 | 322505 | - | 3.D.1.5.1 |
| CAZyme | Rep_450_c_1 | Rep_450_c_1_275 | 322511 | 325192 | - | GH2 |
| TC | Rep_450_c_1 | Rep_450_c_1_276 | 326092 | 329310 | + | 1.B.14.6.1 |
Gene ID: Rep_450_c_1_270
Type: TC
Location: 315081 - 316358 (+)
Type: TC
Location: 315081 - 316358 (+)
Gene ID: Rep_450_c_1_271
Type: pfam
Location: 316561 - 318114 (-)
Type: pfam
Location: 316561 - 318114 (-)
Gene ID: Rep_450_c_1_272
Type: TC
Location: 318273 - 318749 (-)
Type: TC
Location: 318273 - 318749 (-)
Gene ID: Rep_450_c_1_273
Type: STP
Location: 318770 - 320536 (-)
Type: STP
Location: 318770 - 320536 (-)
Gene ID: Rep_450_c_1_274
Type: TC
Location: 320598 - 322505 (-)
Type: TC
Location: 320598 - 322505 (-)
Gene ID: Rep_450_c_1_275
Type: CAZyme
Location: 322511 - 325192 (-)
Type: CAZyme
Location: 322511 - 325192 (-)
Gene ID: Rep_450_c_1_276
Type: TC
Location: 326092 - 329310 (+)
Type: TC
Location: 326092 - 329310 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.