Cluster: Rep_450_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_08524
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_450_c_0 | Rep_450_c_0_536 | 645217 | 647565 | - | GH3 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_537 | 647562 | 650303 | - | GH2 |
| sulfatase | Rep_450_c_0 | Rep_450_c_0_538 | 650429 | 651922 | - | S1_15 |
| TF | Rep_450_c_0 | Rep_450_c_0_539 | 651964 | 652833 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_540 | 652952 | 655753 | - | GH2 |
| pfam | Rep_450_c_0 | Rep_450_c_0_541 | 655774 | 659046 | - | TPR_8 | DUF5107 |
| TC | Rep_450_c_0 | Rep_450_c_0_542 | 659054 | 660340 | - | 2.A.1.1.3 |
| TF | Rep_450_c_0 | Rep_450_c_0_543 | 660499 | 661383 | + | HTH_AraC | HTH_AraC |
| pfam | Rep_450_c_0 | Rep_450_c_0_544 | 661408 | 663087 | - | GHL10 | DUF4015 |
| TC | Rep_450_c_0 | Rep_450_c_0_545 | 663169 | 664599 | + | 2.A.114.1.4 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_546 | 664586 | 664807 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_547 | 664832 | 665323 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_548 | 665418 | 667727 | - | GH20 |
Gene ID: Rep_450_c_0_536
Type: CAZyme
Location: 645217 - 647565 (-)
Type: CAZyme
Location: 645217 - 647565 (-)
Gene ID: Rep_450_c_0_537
Type: CAZyme
Location: 647562 - 650303 (-)
Type: CAZyme
Location: 647562 - 650303 (-)
Gene ID: Rep_450_c_0_538
Type: sulfatase
Location: 650429 - 651922 (-)
Type: sulfatase
Location: 650429 - 651922 (-)
Gene ID: Rep_450_c_0_539
Type: TF
Location: 651964 - 652833 (-)
Type: TF
Location: 651964 - 652833 (-)
Gene ID: Rep_450_c_0_540
Type: CAZyme
Location: 652952 - 655753 (-)
Type: CAZyme
Location: 652952 - 655753 (-)
Gene ID: Rep_450_c_0_541
Type: pfam
Location: 655774 - 659046 (-)
Type: pfam
Location: 655774 - 659046 (-)
Gene ID: Rep_450_c_0_542
Type: TC
Location: 659054 - 660340 (-)
Type: TC
Location: 659054 - 660340 (-)
Gene ID: Rep_450_c_0_543
Type: TF
Location: 660499 - 661383 (+)
Type: TF
Location: 660499 - 661383 (+)
Gene ID: Rep_450_c_0_544
Type: pfam
Location: 661408 - 663087 (-)
Type: pfam
Location: 661408 - 663087 (-)
Gene ID: Rep_450_c_0_545
Type: TC
Location: 663169 - 664599 (+)
Type: TC
Location: 663169 - 664599 (+)
Gene ID: Rep_450_c_0_546
Type:
Location: 664586 - 664807 (+)
Type:
Location: 664586 - 664807 (+)
Gene ID: Rep_450_c_0_547
Type:
Location: 664832 - 665323 (+)
Type:
Location: 664832 - 665323 (+)
Gene ID: Rep_450_c_0_548
Type: CAZyme
Location: 665418 - 667727 (-)
Type: CAZyme
Location: 665418 - 667727 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_450_c_0_538 | vegan > omnivore | 1.81330 | 0.01827 |
| Rep_450_c_0_538 | vegetarian > omnivore | 2.42620 | 0.03116 |