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Cluster: Rep_450_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_450_c_0 Rep_450_c_0_1038 1248765 1249943 + 2.A.37.2.6
TC Rep_450_c_0 Rep_450_c_0_1039 1250075 1251412 + 2.A.33.1.2
STP Rep_450_c_0 Rep_450_c_0_1040 1251439 1253715 - HATPase_c | HisKA
TC Rep_450_c_0 Rep_450_c_0_1041 1253886 1255379 - 2.A.3.7.1
pfam Rep_450_c_0 Rep_450_c_0_1042 1255542 1256297 + Ion_trans | Ion_trans_2
pfam Rep_450_c_0 Rep_450_c_0_1043 1256393 1259059 + Transglut_core
TC Rep_450_c_0 Rep_450_c_0_1044 1259149 1260015 - 9.B.158.1.1
CAZyme Rep_450_c_0 Rep_450_c_0_1045 1260021 1261343 - GH29
Gene ID: Rep_450_c_0_1038
Type: TC
Location: 1248765 - 1249943 (+)
Gene ID: Rep_450_c_0_1039
Type: TC
Location: 1250075 - 1251412 (+)
Gene ID: Rep_450_c_0_1040
Type: STP
Location: 1251439 - 1253715 (-)
Gene ID: Rep_450_c_0_1041
Type: TC
Location: 1253886 - 1255379 (-)
Gene ID: Rep_450_c_0_1042
Type: pfam
Location: 1255542 - 1256297 (+)
Gene ID: Rep_450_c_0_1043
Type: pfam
Location: 1256393 - 1259059 (+)
Gene ID: Rep_450_c_0_1044
Type: TC
Location: 1259149 - 1260015 (-)
Gene ID: Rep_450_c_0_1045
Type: CAZyme
Location: 1260021 - 1261343 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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