Cluster: Rep_450_CGC56
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_00375
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_450_c_2 | Rep_450_c_2_188 | 222147 | 224246 | - | CBM32 | GH29 |
| CAZyme | Rep_450_c_2 | Rep_450_c_2_189 | 224261 | 226186 | - | GH163 |
| pfam | Rep_450_c_2 | Rep_450_c_2_190 | 226212 | 227846 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_450_c_2 | Rep_450_c_2_191 | 227857 | 230889 | - | 1.B.14.6.1 |
Gene ID: Rep_450_c_2_188
Type: CAZyme
Location: 222147 - 224246 (-)
Type: CAZyme
Location: 222147 - 224246 (-)
Gene ID: Rep_450_c_2_189
Type: CAZyme
Location: 224261 - 226186 (-)
Type: CAZyme
Location: 224261 - 226186 (-)
Gene ID: Rep_450_c_2_190
Type: pfam
Location: 226212 - 227846 (-)
Type: pfam
Location: 226212 - 227846 (-)
Gene ID: Rep_450_c_2_191
Type: TC
Location: 227857 - 230889 (-)
Type: TC
Location: 227857 - 230889 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_450_c_2_188 | vegetarian > vegan | 2.59018 | 0.04526 |
| Rep_450_c_2_191 | vegetarian > vegan | 2.48433 | 0.04995 |