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Cluster: Rep_450_CGC60

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_450_c_2 Rep_450_c_2_252 323603 324670 + GT4
CAZyme Rep_450_c_2 Rep_450_c_2_253 324698 325729 + GT113
CAZyme Rep_450_c_2 Rep_450_c_2_254 325831 326538 + GT32
NULL(UNKNOWN) Rep_450_c_2 Rep_450_c_2_255 327849 327941 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_450_c_2 Rep_450_c_2_256 327908 328966 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
TC Rep_450_c_2 Rep_450_c_2_257 328971 329600 - 2.A.123.4.1
CAZyme Rep_450_c_2 Rep_450_c_2_258 329597 330328 - GT2
CAZyme Rep_450_c_2 Rep_450_c_2_259 330325 331965 - GT83
CAZyme Rep_450_c_2 Rep_450_c_2_260 332062 333171 - GT56
STP Rep_450_c_2 Rep_450_c_2_261 333168 334301 - Aminotran_1_2
CAZyme Rep_450_c_2 Rep_450_c_2_262 334435 335262 + GT2
Gene ID: Rep_450_c_2_252
Type: CAZyme
Location: 323603 - 324670 (+)
Gene ID: Rep_450_c_2_253
Type: CAZyme
Location: 324698 - 325729 (+)
Gene ID: Rep_450_c_2_254
Type: CAZyme
Location: 325831 - 326538 (+)
Gene ID: Rep_450_c_2_255
Type:
Location: 327849 - 327941 (+)
Gene ID: Rep_450_c_2_256
Type: pfam
Location: 327908 - 328966 (-)
Gene ID: Rep_450_c_2_257
Type: TC
Location: 328971 - 329600 (-)
Gene ID: Rep_450_c_2_258
Type: CAZyme
Location: 329597 - 330328 (-)
Gene ID: Rep_450_c_2_259
Type: CAZyme
Location: 330325 - 331965 (-)
Gene ID: Rep_450_c_2_260
Type: CAZyme
Location: 332062 - 333171 (-)
Gene ID: Rep_450_c_2_261
Type: STP
Location: 333168 - 334301 (-)
Gene ID: Rep_450_c_2_262
Type: CAZyme
Location: 334435 - 335262 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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