Genome Details
Selected Rep_genome_ID: HRGMv2_3764
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR039000 | 2,500,125 | 97.96% | 0% | China | Asia | CGMR |
| HRGMv2_3764 | 2,538,809 | 97.95% | 0% | UK | Europe | HRGM |
| MGYG000001881 | 2,552,003 | 97.96% | 0% | Denmark | Europe | UHGG |
| Rep_720 | 2,436,636 | 97.2789% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_3764_CGC7 | CGCFAM_00013 | Yes | 5 | 1 | |
| HRGMv2_3764_CGC8 | CGCFAM_00015 | Yes | 6 | 3 | |
| HRGMv2_3764_CGC11 | CGCFAM_01178 | Yes | 20 | 11 | |
| HRGMv2_3764_CGC25 | CGCFAM_01239 | Yes | 7 | 2 | host glycan |
| HRGMv2_3764_CGC22 | CGCFAM_01377 | Yes | 7 | 1 | |
| HRGMv2_3764_CGC21 | CGCFAM_01384 | Yes | 3 | 1 | |
| HRGMv2_3764_CGC34 | CGCFAM_02035 | Yes | 9 | 2 | |
| HRGMv2_3764_CGC3 | CGCFAM_02036 | Yes | 5 | 1 | |
| HRGMv2_3764_CGC19 | CGCFAM_02549 | Yes | 13 | 6 | |
| HRGMv2_3764_CGC33 | CGCFAM_02551 | Yes | 6 | 1 | |
| HRGMv2_3764_CGC15 | CGCFAM_03333 | Yes | 5 | 1 | |
| HRGMv2_3764_CGC26 | CGCFAM_03334 | Yes | 3 | 1 | |
| HRGMv2_3764_CGC13 | CGCFAM_03459 | Yes | 3 | 1 | |
| HRGMv2_3764_CGC6 | CGCFAM_04657 | Yes | 4 | 1 | |
| HRGMv2_3764_CGC24 | CGCFAM_06238 | Yes | 3 | 1 | |
| HRGMv2_3764_CGC5 | CGCFAM_10429 | Yes | 3 | 1 |
Top CAZyme Families