Cluster: HRGMv2_3764_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: HRGMv2_3764
- CGC Family ID: CGCFAM_01239
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3764_13 | HRGMv2_3764_13_59 | 70816 | 71289 | - | CBM50 |
| pfam | HRGMv2_3764_13 | HRGMv2_3764_13_60 | 71359 | 72174 | - | TatD_DNase |
| pfam | HRGMv2_3764_13 | HRGMv2_3764_13_61 | 72247 | 73359 | + | LpxR |
| CAZyme | HRGMv2_3764_13 | HRGMv2_3764_13_62 | 73496 | 77290 | + | CBM32 | GH2 |
| pfam | HRGMv2_3764_13 | HRGMv2_3764_13_63 | 77479 | 78165 | - | PEP-CTERM |
| NULL(UNKNOWN) | HRGMv2_3764_13 | HRGMv2_3764_13_64 | 78172 | 79182 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3764_13 | HRGMv2_3764_13_65 | 79870 | 82452 | + | 3.A.9.1.2 |
Gene ID: HRGMv2_3764_13_59
Type: CAZyme
Location: 70816 - 71289 (-)
Type: CAZyme
Location: 70816 - 71289 (-)
Gene ID: HRGMv2_3764_13_60
Type: pfam
Location: 71359 - 72174 (-)
Type: pfam
Location: 71359 - 72174 (-)
Gene ID: HRGMv2_3764_13_61
Type: pfam
Location: 72247 - 73359 (+)
Type: pfam
Location: 72247 - 73359 (+)
Gene ID: HRGMv2_3764_13_62
Type: CAZyme
Location: 73496 - 77290 (+)
Type: CAZyme
Location: 73496 - 77290 (+)
Gene ID: HRGMv2_3764_13_63
Type: pfam
Location: 77479 - 78165 (-)
Type: pfam
Location: 77479 - 78165 (-)
Gene ID: HRGMv2_3764_13_64
Type:
Location: 78172 - 79182 (-)
Type:
Location: 78172 - 79182 (-)
Gene ID: HRGMv2_3764_13_65
Type: TC
Location: 79870 - 82452 (+)
Type: TC
Location: 79870 - 82452 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.