Cluster: HRGMv2_3764_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3764
- CGC Family ID: CGCFAM_00013
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3764_3 | HRGMv2_3764_3_97 | 113244 | 114368 | - | GT28 |
| TC | HRGMv2_3764_3 | HRGMv2_3764_3_98 | 114365 | 115507 | - | 2.A.103.1.1 |
| pfam | HRGMv2_3764_3 | HRGMv2_3764_3_99 | 115532 | 116332 | - | LysM | LysM |
| pfam | HRGMv2_3764_3 | HRGMv2_3764_3_100 | 116356 | 117666 | - | Mur_ligase_C | Mur_ligase_M | NAD_binding_8 | MurD-like_N |
| TC | HRGMv2_3764_3 | HRGMv2_3764_3_101 | 117679 | 118782 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_3764_3_97
Type: CAZyme
Location: 113244 - 114368 (-)
Type: CAZyme
Location: 113244 - 114368 (-)
Gene ID: HRGMv2_3764_3_98
Type: TC
Location: 114365 - 115507 (-)
Type: TC
Location: 114365 - 115507 (-)
Gene ID: HRGMv2_3764_3_99
Type: pfam
Location: 115532 - 116332 (-)
Type: pfam
Location: 115532 - 116332 (-)
Gene ID: HRGMv2_3764_3_100
Type: pfam
Location: 116356 - 117666 (-)
Type: pfam
Location: 116356 - 117666 (-)
Gene ID: HRGMv2_3764_3_101
Type: TC
Location: 117679 - 118782 (-)
Type: TC
Location: 117679 - 118782 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.