Cluster: HRGMv2_3764_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3764
- CGC Family ID: CGCFAM_02036
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3764_2 | HRGMv2_3764_2_18 | 15647 | 16609 | + | CE4 |
| TC | HRGMv2_3764_2 | HRGMv2_3764_2_19 | 16858 | 19239 | + | 2.A.6.4.3 |
| NULL(UNKNOWN) | HRGMv2_3764_2 | HRGMv2_3764_2_20 | 19283 | 19504 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3764_2 | HRGMv2_3764_2_21 | 19534 | 20670 | - | EF-hand_1 | EF-hand_5 | EF-hand_5 | EF-hand_5 | EF-hand_5 | EF-hand_7 | EF-hand_7 |
| TC | HRGMv2_3764_2 | HRGMv2_3764_2_22 | 20950 | 22065 | - | 3.A.11.1.3 |
Gene ID: HRGMv2_3764_2_18
Type: CAZyme
Location: 15647 - 16609 (+)
Type: CAZyme
Location: 15647 - 16609 (+)
Gene ID: HRGMv2_3764_2_19
Type: TC
Location: 16858 - 19239 (+)
Type: TC
Location: 16858 - 19239 (+)
Gene ID: HRGMv2_3764_2_20
Type:
Location: 19283 - 19504 (+)
Type:
Location: 19283 - 19504 (+)
Gene ID: HRGMv2_3764_2_21
Type: pfam
Location: 19534 - 20670 (-)
Type: pfam
Location: 19534 - 20670 (-)
Gene ID: HRGMv2_3764_2_22
Type: TC
Location: 20950 - 22065 (-)
Type: TC
Location: 20950 - 22065 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.