Cluster: HRGMv2_3764_CGC19
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3764
- CGC Family ID: CGCFAM_02549
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3764_10 | HRGMv2_3764_10_29 | 38339 | 39811 | + | 2.A.114.1.4 |
| pfam | HRGMv2_3764_10 | HRGMv2_3764_10_30 | 39816 | 41159 | + | MFS_1 |
| TC | HRGMv2_3764_10 | HRGMv2_3764_10_31 | 41315 | 41908 | + | 3.D.1.8.1 |
| CAZyme | HRGMv2_3764_10 | HRGMv2_3764_10_32 | 41995 | 43143 | + | CE9 |
| pfam | HRGMv2_3764_10 | HRGMv2_3764_10_33 | 43228 | 44268 | + | Biotin_lipoyl | E3_binding |
| peptidase | HRGMv2_3764_10 | HRGMv2_3764_10_34 | 44332 | 44895 | + | C56.UNW |
| CAZyme | HRGMv2_3764_10 | HRGMv2_3764_10_35 | 44975 | 46051 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_3764_10 | HRGMv2_3764_10_36 | 46435 | 47643 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3764_10 | HRGMv2_3764_10_37 | 47640 | 48695 | + | GT2 |
| CAZyme | HRGMv2_3764_10 | HRGMv2_3764_10_38 | 48716 | 49612 | + | GT11 |
| CAZyme | HRGMv2_3764_10 | HRGMv2_3764_10_39 | 49637 | 50761 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_3764_10 | HRGMv2_3764_10_40 | 50716 | 52125 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3764_10 | HRGMv2_3764_10_41 | 52122 | 53237 | + | GT8 |
Gene ID: HRGMv2_3764_10_29
Type: TC
Location: 38339 - 39811 (+)
Type: TC
Location: 38339 - 39811 (+)
Gene ID: HRGMv2_3764_10_30
Type: pfam
Location: 39816 - 41159 (+)
Type: pfam
Location: 39816 - 41159 (+)
Gene ID: HRGMv2_3764_10_31
Type: TC
Location: 41315 - 41908 (+)
Type: TC
Location: 41315 - 41908 (+)
Gene ID: HRGMv2_3764_10_32
Type: CAZyme
Location: 41995 - 43143 (+)
Type: CAZyme
Location: 41995 - 43143 (+)
Gene ID: HRGMv2_3764_10_33
Type: pfam
Location: 43228 - 44268 (+)
Type: pfam
Location: 43228 - 44268 (+)
Gene ID: HRGMv2_3764_10_34
Type: peptidase
Location: 44332 - 44895 (+)
Type: peptidase
Location: 44332 - 44895 (+)
Gene ID: HRGMv2_3764_10_35
Type: CAZyme
Location: 44975 - 46051 (-)
Type: CAZyme
Location: 44975 - 46051 (-)
Gene ID: HRGMv2_3764_10_36
Type:
Location: 46435 - 47643 (+)
Type:
Location: 46435 - 47643 (+)
Gene ID: HRGMv2_3764_10_37
Type: CAZyme
Location: 47640 - 48695 (+)
Type: CAZyme
Location: 47640 - 48695 (+)
Gene ID: HRGMv2_3764_10_38
Type: CAZyme
Location: 48716 - 49612 (+)
Type: CAZyme
Location: 48716 - 49612 (+)
Gene ID: HRGMv2_3764_10_39
Type: CAZyme
Location: 49637 - 50761 (+)
Type: CAZyme
Location: 49637 - 50761 (+)
Gene ID: HRGMv2_3764_10_40
Type:
Location: 50716 - 52125 (+)
Type:
Location: 50716 - 52125 (+)
Gene ID: HRGMv2_3764_10_41
Type: CAZyme
Location: 52122 - 53237 (+)
Type: CAZyme
Location: 52122 - 53237 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.