Cluster: HRGMv2_3764_CGC33
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3764
- CGC Family ID: CGCFAM_02551
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3764_21 | HRGMv2_3764_21_5 | 6072 | 7628 | + | GH20 |
| pfam | HRGMv2_3764_21 | HRGMv2_3764_21_6 | 7750 | 9165 | + | tRNA-synt_1e | DALR_2 | CysS_C |
| STP | HRGMv2_3764_21 | HRGMv2_3764_21_7 | 9170 | 9508 | + | AraC_binding |
| TC | HRGMv2_3764_21 | HRGMv2_3764_21_8 | 9508 | 10422 | + | 2.A.7.3.36 |
| TC | HRGMv2_3764_21 | HRGMv2_3764_21_9 | 10615 | 12609 | - | 3.A.1.121.4 |
| TC | HRGMv2_3764_21 | HRGMv2_3764_21_10 | 12690 | 13193 | - | 3.D.1.8.1 |
Gene ID: HRGMv2_3764_21_5
Type: CAZyme
Location: 6072 - 7628 (+)
Type: CAZyme
Location: 6072 - 7628 (+)
Gene ID: HRGMv2_3764_21_6
Type: pfam
Location: 7750 - 9165 (+)
Type: pfam
Location: 7750 - 9165 (+)
Gene ID: HRGMv2_3764_21_7
Type: STP
Location: 9170 - 9508 (+)
Type: STP
Location: 9170 - 9508 (+)
Gene ID: HRGMv2_3764_21_8
Type: TC
Location: 9508 - 10422 (+)
Type: TC
Location: 9508 - 10422 (+)
Gene ID: HRGMv2_3764_21_9
Type: TC
Location: 10615 - 12609 (-)
Type: TC
Location: 10615 - 12609 (-)
Gene ID: HRGMv2_3764_21_10
Type: TC
Location: 12690 - 13193 (-)
Type: TC
Location: 12690 - 13193 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.