Cluster: HRGMv2_3764_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3764
- CGC Family ID: CGCFAM_01384
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3764_12 | HRGMv2_3764_12_37 | 48276 | 49892 | + | GH29 |
| pfam | HRGMv2_3764_12 | HRGMv2_3764_12_38 | 49917 | 52301 | + | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | Nlig-Ia |
| TC | HRGMv2_3764_12 | HRGMv2_3764_12_39 | 52480 | 53088 | + | 4.F.1.1.8 |
Gene ID: HRGMv2_3764_12_37
Type: CAZyme
Location: 48276 - 49892 (+)
Type: CAZyme
Location: 48276 - 49892 (+)
Gene ID: HRGMv2_3764_12_38
Type: pfam
Location: 49917 - 52301 (+)
Type: pfam
Location: 49917 - 52301 (+)
Gene ID: HRGMv2_3764_12_39
Type: TC
Location: 52480 - 53088 (+)
Type: TC
Location: 52480 - 53088 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia muciniphila_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.