Genome Details
Selected Rep_genome_ID: HRGMv2_2189
Total Genomes Found: 6
Total Genomes Found: 6
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| B129.bin_6 | 3,411,802 | 99.12% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR079930 | 2,954,422 | 99.12% | 0% | China | Asia | CGMR |
| HRGMv2_2189 | 3,530,461 | 99.12% | 0% | South Korea | Asia | HRGM |
| SPMP61_bin.11 | 2,629,903 | 91.91% | 3.04% | Singapore | Asia | SPMP |
| SPMP79_bin.9 | 2,899,641 | 92.87% | 2.34% | Singapore | Asia | SPMP |
| SW141_bin.4 | 2,576,560 | 95.03% | 0.1% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2189_CGC1 | CGCFAM_00029 | Yes | 8 | 3 | |
| HRGMv2_2189_CGC7 | CGCFAM_00090 | Yes | 5 | 2 | |
| HRGMv2_2189_CGC32 | CGCFAM_00099 | Yes | 4 | 1 | |
| HRGMv2_2189_CGC5 | CGCFAM_00250 | Yes | 4 | 1 | |
| HRGMv2_2189_CGC29 | CGCFAM_00312 | Yes | 11 | 5 | host glycan |
| HRGMv2_2189_CGC31 | CGCFAM_00389 | Yes | 10 | 3 | |
| HRGMv2_2189_CGC17 | CGCFAM_00420 | Yes | 8 | 1 | |
| HRGMv2_2189_CGC28 | CGCFAM_00499 | Yes | 4 | 2 | |
| HRGMv2_2189_CGC30 | CGCFAM_00859 | Yes | 8 | 2 | |
| HRGMv2_2189_CGC36 | CGCFAM_02976 | Yes | 10 | 1 | |
| HRGMv2_2189_CGC38 | CGCFAM_03751 | Yes | 13 | 7 | |
| HRGMv2_2189_CGC9 | CGCFAM_04042 | Yes | 7 | 1 | |
| HRGMv2_2189_CGC23 | CGCFAM_07802 | Yes | 3 | 1 | |
| HRGMv2_2189_CGC25 | CGCFAM_08989 | Yes | 4 | 2 | |
| HRGMv2_2189_CGC2 | CGCFAM_09980 | Yes | 4 | 1 | |
| HRGMv2_2189_CGC39 | CGCFAM_09981 | Yes | 4 | 1 | |
| HRGMv2_2189_CGC4 | CGCFAM_09982 | Yes | 3 | 1 |
Top CAZyme Families