Cluster: HRGMv2_2189_CGC23
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2189
- CGC Family ID: CGCFAM_07802
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2079 | 2281043 | 2281519 | - | 4.A.1.1.1 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2080 | 2281770 | 2283098 | + | 2.A.66.1.37 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2081 | 2283196 | 2284710 | - | GH77 |
Gene ID: HRGMv2_2189_1_2079
Type: TC
Location: 2281043 - 2281519 (-)
Type: TC
Location: 2281043 - 2281519 (-)
Gene ID: HRGMv2_2189_1_2080
Type: TC
Location: 2281770 - 2283098 (+)
Type: TC
Location: 2281770 - 2283098 (+)
Gene ID: HRGMv2_2189_1_2081
Type: CAZyme
Location: 2283196 - 2284710 (-)
Type: CAZyme
Location: 2283196 - 2284710 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2189_1_2081 | vegan > omnivore | 1.28974 | 0.03529 |