Cluster: HRGMv2_2189_CGC38
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2189
- CGC Family ID: CGCFAM_03751
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2785 | 3082922 | 3084106 | + | GH10 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2786 | 3084133 | 3084684 | + | CE20 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2787 | 3084704 | 3086014 | + | CE20 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2788 | 3085974 | 3087749 | + | 9.B.33.1.1 |
| TF | HRGMv2_2189_1 | HRGMv2_2189_1_2789 | 3087755 | 3089377 | + | HTH_AraC |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2790 | 3089475 | 3091136 | + | 3.A.1.1.29 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2791 | 3091205 | 3092161 | + | 3.A.1.1.29 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2792 | 3092174 | 3093070 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2793 | 3093092 | 3095194 | + | GH3 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2794 | 3095220 | 3095855 | + | 9.B.28.1.2 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2795 | 3095848 | 3097350 | + | GH51_1 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2796 | 3097897 | 3099393 | + | CBM91 | GH43_10 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2797 | 3099740 | 3100132 | + | GH27 |
Gene ID: HRGMv2_2189_1_2785
Type: CAZyme
Location: 3082922 - 3084106 (+)
Type: CAZyme
Location: 3082922 - 3084106 (+)
Gene ID: HRGMv2_2189_1_2786
Type: CAZyme
Location: 3084133 - 3084684 (+)
Type: CAZyme
Location: 3084133 - 3084684 (+)
Gene ID: HRGMv2_2189_1_2787
Type: CAZyme
Location: 3084704 - 3086014 (+)
Type: CAZyme
Location: 3084704 - 3086014 (+)
Gene ID: HRGMv2_2189_1_2788
Type: TC
Location: 3085974 - 3087749 (+)
Type: TC
Location: 3085974 - 3087749 (+)
Gene ID: HRGMv2_2189_1_2789
Type: TF
Location: 3087755 - 3089377 (+)
Type: TF
Location: 3087755 - 3089377 (+)
Gene ID: HRGMv2_2189_1_2790
Type: TC
Location: 3089475 - 3091136 (+)
Type: TC
Location: 3089475 - 3091136 (+)
Gene ID: HRGMv2_2189_1_2791
Type: TC
Location: 3091205 - 3092161 (+)
Type: TC
Location: 3091205 - 3092161 (+)
Gene ID: HRGMv2_2189_1_2792
Type: TC
Location: 3092174 - 3093070 (+)
Type: TC
Location: 3092174 - 3093070 (+)
Gene ID: HRGMv2_2189_1_2793
Type: CAZyme
Location: 3093092 - 3095194 (+)
Type: CAZyme
Location: 3093092 - 3095194 (+)
Gene ID: HRGMv2_2189_1_2794
Type: TC
Location: 3095220 - 3095855 (+)
Type: TC
Location: 3095220 - 3095855 (+)
Gene ID: HRGMv2_2189_1_2795
Type: CAZyme
Location: 3095848 - 3097350 (+)
Type: CAZyme
Location: 3095848 - 3097350 (+)
Gene ID: HRGMv2_2189_1_2796
Type: CAZyme
Location: 3097897 - 3099393 (+)
Type: CAZyme
Location: 3097897 - 3099393 (+)
Gene ID: HRGMv2_2189_1_2797
Type: CAZyme
Location: 3099740 - 3100132 (+)
Type: CAZyme
Location: 3099740 - 3100132 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.