Cluster: HRGMv2_2189_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2189
- CGC Family ID: CGCFAM_09980
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_18 | 20509 | 22062 | - | GH25 |
| TF | HRGMv2_2189_1 | HRGMv2_2189_1_19 | 22269 | 24014 | + | 0040266 |
| pfam | HRGMv2_2189_1 | HRGMv2_2189_1_20 | 24007 | 24864 | + | NTP_transferase | NTP_transf_3 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_21 | 24882 | 26432 | + | 2.A.15.1.11 |
Gene ID: HRGMv2_2189_1_18
Type: CAZyme
Location: 20509 - 22062 (-)
Type: CAZyme
Location: 20509 - 22062 (-)
Gene ID: HRGMv2_2189_1_19
Type: TF
Location: 22269 - 24014 (+)
Type: TF
Location: 22269 - 24014 (+)
Gene ID: HRGMv2_2189_1_20
Type: pfam
Location: 24007 - 24864 (+)
Type: pfam
Location: 24007 - 24864 (+)
Gene ID: HRGMv2_2189_1_21
Type: TC
Location: 24882 - 26432 (+)
Type: TC
Location: 24882 - 26432 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.