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Cluster: HRGMv2_2189_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2189_1 HRGMv2_2189_1_1001 1112598 1115183 + GT51
TC HRGMv2_2189_1 HRGMv2_2189_1_1002 1115310 1116629 - 2.A.49.9.2
TC HRGMv2_2189_1 HRGMv2_2189_1_1003 1116848 1117882 - 2.A.28.2.4
pfam HRGMv2_2189_1 HRGMv2_2189_1_1004 1118535 1119893 + MatE | MatE | MurJ
TC HRGMv2_2189_1 HRGMv2_2189_1_1005 1120038 1121393 - 2.A.23.1.2
TF HRGMv2_2189_1 HRGMv2_2189_1_1006 1121672 1122529 - HTH_DeoR
TC HRGMv2_2189_1 HRGMv2_2189_1_1007 1122624 1123619 - 8.A.5.1.4
Gene ID: HRGMv2_2189_1_1001
Type: CAZyme
Location: 1112598 - 1115183 (+)
Gene ID: HRGMv2_2189_1_1002
Type: TC
Location: 1115310 - 1116629 (-)
Gene ID: HRGMv2_2189_1_1003
Type: TC
Location: 1116848 - 1117882 (-)
Gene ID: HRGMv2_2189_1_1004
Type: pfam
Location: 1118535 - 1119893 (+)
Gene ID: HRGMv2_2189_1_1005
Type: TC
Location: 1120038 - 1121393 (-)
Gene ID: HRGMv2_2189_1_1006
Type: TF
Location: 1121672 - 1122529 (-)
Gene ID: HRGMv2_2189_1_1007
Type: TC
Location: 1122624 - 1123619 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2189_1_1007 vegan > omnivore 1.70924 0.03529

🧭 Explore Read Mapping of CGC

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