Cluster: HRGMv2_2189_CGC39
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2189
- CGC Family ID: CGCFAM_09981
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2934 | 3251639 | 3253375 | - | 3.D.1.7.1 |
| STP | HRGMv2_2189_1 | HRGMv2_2189_1_2935 | 3253369 | 3255201 | - | Pyr_redox_2 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2936 | 3255445 | 3257532 | - | GH13_11 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2937 | 3257757 | 3258587 | + | 3.A.1.132.3 |
Gene ID: HRGMv2_2189_1_2934
Type: TC
Location: 3251639 - 3253375 (-)
Type: TC
Location: 3251639 - 3253375 (-)
Gene ID: HRGMv2_2189_1_2935
Type: STP
Location: 3253369 - 3255201 (-)
Type: STP
Location: 3253369 - 3255201 (-)
Gene ID: HRGMv2_2189_1_2936
Type: CAZyme
Location: 3255445 - 3257532 (-)
Type: CAZyme
Location: 3255445 - 3257532 (-)
Gene ID: HRGMv2_2189_1_2937
Type: TC
Location: 3257757 - 3258587 (+)
Type: TC
Location: 3257757 - 3258587 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.