Cluster: HRGMv2_2189_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2189
- CGC Family ID: CGCFAM_00499
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2403 | 2639403 | 2640767 | + | 2.A.2.3.1 |
| peptidase | HRGMv2_2189_1 | HRGMv2_2189_1_2404 | 2641398 | 2642756 | + | M20.UPA |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2405 | 2642939 | 2645335 | + | GH3 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2406 | 2645484 | 2648504 | + | GH3 |
Gene ID: HRGMv2_2189_1_2403
Type: TC
Location: 2639403 - 2640767 (+)
Type: TC
Location: 2639403 - 2640767 (+)
Gene ID: HRGMv2_2189_1_2404
Type: peptidase
Location: 2641398 - 2642756 (+)
Type: peptidase
Location: 2641398 - 2642756 (+)
Gene ID: HRGMv2_2189_1_2405
Type: CAZyme
Location: 2642939 - 2645335 (+)
Type: CAZyme
Location: 2642939 - 2645335 (+)
Gene ID: HRGMv2_2189_1_2406
Type: CAZyme
Location: 2645484 - 2648504 (+)
Type: CAZyme
Location: 2645484 - 2648504 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2189_1_2406 | vegan > omnivore | 1.66537 | 0.01301 |