Cluster: HRGMv2_2189_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2189
- CGC Family ID: CGCFAM_00090
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_691 | 772735 | 774180 | - | 2.A.2.1.1 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_692 | 774199 | 776616 | - | GH3 |
| TF | HRGMv2_2189_1 | HRGMv2_2189_1_693 | 776762 | 777520 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_694 | 777623 | 779065 | - | GH32 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_695 | 779087 | 781006 | - | 4.A.1.2.9 |
Gene ID: HRGMv2_2189_1_691
Type: TC
Location: 772735 - 774180 (-)
Type: TC
Location: 772735 - 774180 (-)
Gene ID: HRGMv2_2189_1_692
Type: CAZyme
Location: 774199 - 776616 (-)
Type: CAZyme
Location: 774199 - 776616 (-)
Gene ID: HRGMv2_2189_1_693
Type: TF
Location: 776762 - 777520 (+)
Type: TF
Location: 776762 - 777520 (+)
Gene ID: HRGMv2_2189_1_694
Type: CAZyme
Location: 777623 - 779065 (-)
Type: CAZyme
Location: 777623 - 779065 (-)
Gene ID: HRGMv2_2189_1_695
Type: TC
Location: 779087 - 781006 (-)
Type: TC
Location: 779087 - 781006 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2189_1_693 | vegan > omnivore | 1.03444 | 0.03529 |