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Cluster: HRGMv2_2189_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2189_1 HRGMv2_2189_1_1 2 2071 + GH73
NULL(UNKNOWN) HRGMv2_2189_1 HRGMv2_2189_1_2 2105 2245 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2189_1 HRGMv2_2189_1_3 3212 5152 + 9.B.18.2.1
pfam HRGMv2_2189_1 HRGMv2_2189_1_4 5157 6356 + Aminotran_1_2 | DegT_DnrJ_EryC1 | Cys_Met_Meta_PP
TC HRGMv2_2189_1 HRGMv2_2189_1_5 6397 7077 + 9.B.18.1.3
CAZyme HRGMv2_2189_1 HRGMv2_2189_1_6 7098 8105 + GT2
TC HRGMv2_2189_1 HRGMv2_2189_1_7 8120 9592 + 2.A.66.2.22
CAZyme HRGMv2_2189_1 HRGMv2_2189_1_8 9585 10565 + GT2
Gene ID: HRGMv2_2189_1_1
Type: CAZyme
Location: 2 - 2071 (+)
Gene ID: HRGMv2_2189_1_2
Type:
Location: 2105 - 2245 (+)
Gene ID: HRGMv2_2189_1_3
Type: TC
Location: 3212 - 5152 (+)
Gene ID: HRGMv2_2189_1_4
Type: pfam
Location: 5157 - 6356 (+)
Gene ID: HRGMv2_2189_1_5
Type: TC
Location: 6397 - 7077 (+)
Gene ID: HRGMv2_2189_1_6
Type: CAZyme
Location: 7098 - 8105 (+)
Gene ID: HRGMv2_2189_1_7
Type: TC
Location: 8120 - 9592 (+)
Gene ID: HRGMv2_2189_1_8
Type: CAZyme
Location: 9585 - 10565 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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