Cluster: HRGMv2_2189_CGC29
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: HRGMv2_2189
- CGC Family ID: CGCFAM_00312
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2427 | 2668622 | 2674279 | + | GH95 |
| TF | HRGMv2_2189_1 | HRGMv2_2189_1_2428 | 2674373 | 2675224 | - | HTH_AraC |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2429 | 2675533 | 2677686 | + | GH112 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2430 | 2677766 | 2679073 | + | 3.A.1.1.4 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2431 | 2679146 | 2680024 | + | 3.A.1.1.4 |
| TC | HRGMv2_2189_1 | HRGMv2_2189_1_2432 | 2680017 | 2680823 | + | 3.A.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_2189_1 | HRGMv2_2189_1_2433 | 2680823 | 2681284 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2434 | 2681235 | 2682527 | + | GH136 |
| NULL(UNKNOWN) | HRGMv2_2189_1 | HRGMv2_2189_1_2435 | 2682758 | 2683504 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2436 | 2683521 | 2687447 | + | GH136 |
| CAZyme | HRGMv2_2189_1 | HRGMv2_2189_1_2437 | 2687550 | 2692679 | + | GH29 |
Gene ID: HRGMv2_2189_1_2427
Type: CAZyme
Location: 2668622 - 2674279 (+)
Type: CAZyme
Location: 2668622 - 2674279 (+)
Gene ID: HRGMv2_2189_1_2428
Type: TF
Location: 2674373 - 2675224 (-)
Type: TF
Location: 2674373 - 2675224 (-)
Gene ID: HRGMv2_2189_1_2429
Type: CAZyme
Location: 2675533 - 2677686 (+)
Type: CAZyme
Location: 2675533 - 2677686 (+)
Gene ID: HRGMv2_2189_1_2430
Type: TC
Location: 2677766 - 2679073 (+)
Type: TC
Location: 2677766 - 2679073 (+)
Gene ID: HRGMv2_2189_1_2431
Type: TC
Location: 2679146 - 2680024 (+)
Type: TC
Location: 2679146 - 2680024 (+)
Gene ID: HRGMv2_2189_1_2432
Type: TC
Location: 2680017 - 2680823 (+)
Type: TC
Location: 2680017 - 2680823 (+)
Gene ID: HRGMv2_2189_1_2433
Type:
Location: 2680823 - 2681284 (+)
Type:
Location: 2680823 - 2681284 (+)
Gene ID: HRGMv2_2189_1_2434
Type: CAZyme
Location: 2681235 - 2682527 (+)
Type: CAZyme
Location: 2681235 - 2682527 (+)
Gene ID: HRGMv2_2189_1_2435
Type:
Location: 2682758 - 2683504 (+)
Type:
Location: 2682758 - 2683504 (+)
Gene ID: HRGMv2_2189_1_2436
Type: CAZyme
Location: 2683521 - 2687447 (+)
Type: CAZyme
Location: 2683521 - 2687447 (+)
Gene ID: HRGMv2_2189_1_2437
Type: CAZyme
Location: 2687550 - 2692679 (+)
Type: CAZyme
Location: 2687550 - 2692679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter faecis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.