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Genome Details

Selected Rep_genome_ID: HRGMv2_0380
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes megaguti
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_0380 2,966,790 98.05% 1.442% UK Europe HRGM
Rep_626 2,856,253 92.0673% 0.961538% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0380_CGC17 CGCFAM_00006 Yes 14 7
HRGMv2_0380_CGC10 CGCFAM_00016 Yes 5 1 host glycan
HRGMv2_0380_CGC24 CGCFAM_00016 Yes 10 3 host glycan
HRGMv2_0380_CGC45 CGCFAM_00016 Yes 7 1 host glycan
HRGMv2_0380_CGC35 CGCFAM_00023 Yes 8 3
HRGMv2_0380_CGC3 CGCFAM_00152 Yes 9 3
HRGMv2_0380_CGC5 CGCFAM_00331 Yes 12 5 alginate
HRGMv2_0380_CGC40 CGCFAM_00475 Yes 17 3
HRGMv2_0380_CGC44 CGCFAM_00540 Yes 4 2 pectin
HRGMv2_0380_CGC25 CGCFAM_00632 Yes 9 1
HRGMv2_0380_CGC34 CGCFAM_00715 Yes 4 1
HRGMv2_0380_CGC38 CGCFAM_00719 Yes 6 2 beta-glucan
HRGMv2_0380_CGC2 CGCFAM_00983 Yes 7 2
HRGMv2_0380_CGC11 CGCFAM_00996 Yes 3 1
HRGMv2_0380_CGC36 CGCFAM_01056 Yes 3 1
HRGMv2_0380_CGC4 CGCFAM_01494 Yes 12 5
HRGMv2_0380_CGC30 CGCFAM_01496 Yes 10 5
HRGMv2_0380_CGC13 CGCFAM_01657 Yes 7 2
HRGMv2_0380_CGC9 CGCFAM_01792 Yes 10 2
HRGMv2_0380_CGC32 CGCFAM_02181 Yes 5 2
HRGMv2_0380_CGC20 CGCFAM_02418 Yes 6 3
HRGMv2_0380_CGC27 CGCFAM_02874 Yes 10 1
HRGMv2_0380_CGC19 CGCFAM_04550 Yes 5 2
HRGMv2_0380_CGC12 CGCFAM_07384 Yes 11 5
HRGMv2_0380_CGC1 CGCFAM_08253 Yes 6 2
Top CAZyme Families