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Cluster: HRGMv2_0380_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0380_1 HRGMv2_0380_1_137 159895 163104 - 1.B.14.6.2
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_138 163135 164361 - GH20
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_139 164363 165532 - CE9
TC HRGMv2_0380_1 HRGMv2_0380_1_140 165545 166843 - 2.A.1.7.9
pfam HRGMv2_0380_1 HRGMv2_0380_1_141 167134 167910 + Glucosamine_iso
TF HRGMv2_0380_1 HRGMv2_0380_1_142 167955 169007 + LacI
TC HRGMv2_0380_1 HRGMv2_0380_1_143 169138 170616 + 3.A.11.1.3
Gene ID: HRGMv2_0380_1_137
Type: TC
Location: 159895 - 163104 (-)
Gene ID: HRGMv2_0380_1_138
Type: CAZyme
Location: 163135 - 164361 (-)
Gene ID: HRGMv2_0380_1_139
Type: CAZyme
Location: 164363 - 165532 (-)
Gene ID: HRGMv2_0380_1_140
Type: TC
Location: 165545 - 166843 (-)
Gene ID: HRGMv2_0380_1_141
Type: pfam
Location: 167134 - 167910 (+)
Gene ID: HRGMv2_0380_1_142
Type: TF
Location: 167955 - 169007 (+)
Gene ID: HRGMv2_0380_1_143
Type: TC
Location: 169138 - 170616 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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