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Cluster: HRGMv2_0380_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0380_1 HRGMv2_0380_1_207 258171 259172 + 8.A.5.1.3
NULL(UNKNOWN) HRGMv2_0380_1 HRGMv2_0380_1_208 259243 260151 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0380_1 HRGMv2_0380_1_209 260155 261639 - SusD_RagB | SusD-like_3
TC HRGMv2_0380_1 HRGMv2_0380_1_210 261650 264721 - 1.B.14.6.1
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_211 264750 266102 - GH37
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_212 266095 267216 - GH26
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_213 267236 268366 - GH26
TF HRGMv2_0380_1 HRGMv2_0380_1_214 268374 269267 - HTH_AraC
pfam HRGMv2_0380_1 HRGMv2_0380_1_215 269273 270475 - GlcNAc_2-epim
TC HRGMv2_0380_1 HRGMv2_0380_1_216 270472 271923 - 2.A.2.3.5
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_217 271920 273107 - GH130_1
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_218 273131 275149 - GH97
Gene ID: HRGMv2_0380_1_207
Type: TC
Location: 258171 - 259172 (+)
Gene ID: HRGMv2_0380_1_208
Type:
Location: 259243 - 260151 (-)
Gene ID: HRGMv2_0380_1_209
Type: pfam
Location: 260155 - 261639 (-)
Gene ID: HRGMv2_0380_1_210
Type: TC
Location: 261650 - 264721 (-)
Gene ID: HRGMv2_0380_1_211
Type: CAZyme
Location: 264750 - 266102 (-)
Gene ID: HRGMv2_0380_1_212
Type: CAZyme
Location: 266095 - 267216 (-)
Gene ID: HRGMv2_0380_1_213
Type: CAZyme
Location: 267236 - 268366 (-)
Gene ID: HRGMv2_0380_1_214
Type: TF
Location: 268374 - 269267 (-)
Gene ID: HRGMv2_0380_1_215
Type: pfam
Location: 269273 - 270475 (-)
Gene ID: HRGMv2_0380_1_216
Type: TC
Location: 270472 - 271923 (-)
Gene ID: HRGMv2_0380_1_217
Type: CAZyme
Location: 271920 - 273107 (-)
Gene ID: HRGMv2_0380_1_218
Type: CAZyme
Location: 273131 - 275149 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0380_1_207 vegetarian > vegan 1.31061 0.00181
HRGMv2_0380_1_216 vegetarian > omnivore 1.20406 0.03795

🧭 Explore Read Mapping of CGC

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