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Cluster: HRGMv2_0380_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0380_13 HRGMv2_0380_13_40 59270 60970 - 4.C.1.1.4
TC HRGMv2_0380_13 HRGMv2_0380_13_41 61104 61835 - 9.B.31.1.2
TC HRGMv2_0380_13 HRGMv2_0380_13_42 61969 62958 + 2.A.115.1.1
pfam HRGMv2_0380_13 HRGMv2_0380_13_43 63089 64438 + UPF0004 | TRAM | Radical_SAM
TC HRGMv2_0380_13 HRGMv2_0380_13_44 64564 66051 + 1.I.1.1.3
pfam HRGMv2_0380_13 HRGMv2_0380_13_45 66094 67248 + Acyl_transf_3
CAZyme HRGMv2_0380_13 HRGMv2_0380_13_46 67268 69832 + GH84
pfam HRGMv2_0380_13 HRGMv2_0380_13_47 70276 71580 - GTP_EFTU | MMR_HSR1 | MMR_HSR1 | FeoB_N | FeoB_N | AIG1 | KH_dom-like
TC HRGMv2_0380_13 HRGMv2_0380_13_48 71645 73759 - 2.A.37.2.5
TC HRGMv2_0380_13 HRGMv2_0380_13_49 74081 75244 + 2.A.1.7.16
Gene ID: HRGMv2_0380_13_40
Type: TC
Location: 59270 - 60970 (-)
Gene ID: HRGMv2_0380_13_41
Type: TC
Location: 61104 - 61835 (-)
Gene ID: HRGMv2_0380_13_42
Type: TC
Location: 61969 - 62958 (+)
Gene ID: HRGMv2_0380_13_43
Type: pfam
Location: 63089 - 64438 (+)
Gene ID: HRGMv2_0380_13_44
Type: TC
Location: 64564 - 66051 (+)
Gene ID: HRGMv2_0380_13_45
Type: pfam
Location: 66094 - 67248 (+)
Gene ID: HRGMv2_0380_13_46
Type: CAZyme
Location: 67268 - 69832 (+)
Gene ID: HRGMv2_0380_13_47
Type: pfam
Location: 70276 - 71580 (-)
Gene ID: HRGMv2_0380_13_48
Type: TC
Location: 71645 - 73759 (-)
Gene ID: HRGMv2_0380_13_49
Type: TC
Location: 74081 - 75244 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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