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Cluster: HRGMv2_0380_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0380_1 HRGMv2_0380_1_150 176329 177954 - 8.A.46.1.3
TC HRGMv2_0380_1 HRGMv2_0380_1_151 177969 181169 - 1.B.14.6.1
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_152 181431 183176 - GH20
pfam HRGMv2_0380_1 HRGMv2_0380_1_153 183169 183993 - ROK
pfam HRGMv2_0380_1 HRGMv2_0380_1_154 184010 185014 - Metallophos
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_155 185031 186635 - GH63
pfam HRGMv2_0380_1 HRGMv2_0380_1_156 186654 188576 - Alk_phosphatase
pfam HRGMv2_0380_1 HRGMv2_0380_1_157 188585 189451 - Exo_endo_phos
CAZyme HRGMv2_0380_1 HRGMv2_0380_1_158 189484 192375 - GH92
Gene ID: HRGMv2_0380_1_150
Type: TC
Location: 176329 - 177954 (-)
Gene ID: HRGMv2_0380_1_151
Type: TC
Location: 177969 - 181169 (-)
Gene ID: HRGMv2_0380_1_152
Type: CAZyme
Location: 181431 - 183176 (-)
Gene ID: HRGMv2_0380_1_153
Type: pfam
Location: 183169 - 183993 (-)
Gene ID: HRGMv2_0380_1_154
Type: pfam
Location: 184010 - 185014 (-)
Gene ID: HRGMv2_0380_1_155
Type: CAZyme
Location: 185031 - 186635 (-)
Gene ID: HRGMv2_0380_1_156
Type: pfam
Location: 186654 - 188576 (-)
Gene ID: HRGMv2_0380_1_157
Type: pfam
Location: 188585 - 189451 (-)
Gene ID: HRGMv2_0380_1_158
Type: CAZyme
Location: 189484 - 192375 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0380_1_150 vegan > omnivore 1.55759 0.01057

🧭 Explore Read Mapping of CGC

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