Cluster: HRGMv2_0380_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0380
- CGC Family ID: CGCFAM_08253
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0380_1 | HRGMv2_0380_1_128 | 150272 | 150724 | + | 1.E.19.1.15 |
| NULL(UNKNOWN) | HRGMv2_0380_1 | HRGMv2_0380_1_129 | 150705 | 151106 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0380_1 | HRGMv2_0380_1_130 | 151159 | 152337 | - | DUF5009 |
| CAZyme | HRGMv2_0380_1 | HRGMv2_0380_1_131 | 152350 | 153396 | - | GH18 |
| pfam | HRGMv2_0380_1 | HRGMv2_0380_1_132 | 153406 | 154794 | - | PKD | PKD | PKD_3 |
| CAZyme | HRGMv2_0380_1 | HRGMv2_0380_1_133 | 154855 | 156411 | - | GH20 |
Gene ID: HRGMv2_0380_1_128
Type: TC
Location: 150272 - 150724 (+)
Type: TC
Location: 150272 - 150724 (+)
Gene ID: HRGMv2_0380_1_129
Type:
Location: 150705 - 151106 (+)
Type:
Location: 150705 - 151106 (+)
Gene ID: HRGMv2_0380_1_130
Type: pfam
Location: 151159 - 152337 (-)
Type: pfam
Location: 151159 - 152337 (-)
Gene ID: HRGMv2_0380_1_131
Type: CAZyme
Location: 152350 - 153396 (-)
Type: CAZyme
Location: 152350 - 153396 (-)
Gene ID: HRGMv2_0380_1_132
Type: pfam
Location: 153406 - 154794 (-)
Type: pfam
Location: 153406 - 154794 (-)
Gene ID: HRGMv2_0380_1_133
Type: CAZyme
Location: 154855 - 156411 (-)
Type: CAZyme
Location: 154855 - 156411 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes megaguti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.