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Genome Details

Selected Rep_genome_ID: HRGMv2_0372
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes sp938014215
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_0372 2,934,622 99.51% 0.961% Luxembourg Europe HRGM
MGYG000002203 2,806,770 97.56% 0.96% Spain Europe UHGG
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0372_CGC32 CGCFAM_00005 Yes 10 6
HRGMv2_0372_CGC33 CGCFAM_00016 Yes 11 3 host glycan
HRGMv2_0372_CGC44 CGCFAM_00016 Yes 5 1 host glycan
HRGMv2_0372_CGC5 CGCFAM_00016 Yes 6 2 host glycan
HRGMv2_0372_CGC8 CGCFAM_00016 Yes 7 1 host glycan
HRGMv2_0372_CGC9 CGCFAM_00075 Yes 4 2
HRGMv2_0372_CGC18 CGCFAM_00079 Yes 6 3 pectin
HRGMv2_0372_CGC4 CGCFAM_00082 Yes 10 3 beta-mannan
HRGMv2_0372_CGC30 CGCFAM_00110 Yes 10 4 pectin/host glycan
HRGMv2_0372_CGC29 CGCFAM_00173 Yes 7 1
HRGMv2_0372_CGC7 CGCFAM_00475 Yes 17 3
HRGMv2_0372_CGC19 CGCFAM_00511 Yes 14 1
HRGMv2_0372_CGC43 CGCFAM_00564 Yes 5 1
HRGMv2_0372_CGC15 CGCFAM_00581 Yes 8 2
HRGMv2_0372_CGC41 CGCFAM_00632 Yes 7 1
HRGMv2_0372_CGC24 CGCFAM_00715 Yes 4 1
HRGMv2_0372_CGC1 CGCFAM_00915 Yes 12 4
HRGMv2_0372_CGC28 CGCFAM_00921 Yes 5 1
HRGMv2_0372_CGC21 CGCFAM_01792 Yes 8 2
HRGMv2_0372_CGC37 CGCFAM_01944 Yes 8 6
HRGMv2_0372_CGC42 CGCFAM_02171 Yes 10 1
HRGMv2_0372_CGC35 CGCFAM_02756 Yes 5 1
HRGMv2_0372_CGC27 CGCFAM_02874 Yes 11 1
HRGMv2_0372_CGC39 CGCFAM_03098 Yes 10 6
HRGMv2_0372_CGC17 CGCFAM_04196 Yes 9 5
Top CAZyme Families