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Cluster: HRGMv2_0372_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_13 19547 21205 + GH5
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_14 21209 24070 + GH2
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_15 24070 27090 + CBM32 | GH2
TC HRGMv2_0372_14 HRGMv2_0372_14_16 27117 28508 + 2.A.1.14.25
pfam HRGMv2_0372_14 HRGMv2_0372_14_17 28511 29611 + PMI_typeI_cat
pfam HRGMv2_0372_14 HRGMv2_0372_14_18 29755 30948 - GlcNAc_2-epim
TC HRGMv2_0372_14 HRGMv2_0372_14_19 30961 32379 - 2.A.2.3.6
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_20 32379 33554 - GH130_1
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_21 33592 35925 - GH26 | GH5_7
CAZyme HRGMv2_0372_14 HRGMv2_0372_14_22 36127 37629 + GH173
Gene ID: HRGMv2_0372_14_13
Type: CAZyme
Location: 19547 - 21205 (+)
Gene ID: HRGMv2_0372_14_14
Type: CAZyme
Location: 21209 - 24070 (+)
Gene ID: HRGMv2_0372_14_15
Type: CAZyme
Location: 24070 - 27090 (+)
Gene ID: HRGMv2_0372_14_16
Type: TC
Location: 27117 - 28508 (+)
Gene ID: HRGMv2_0372_14_17
Type: pfam
Location: 28511 - 29611 (+)
Gene ID: HRGMv2_0372_14_18
Type: pfam
Location: 29755 - 30948 (-)
Gene ID: HRGMv2_0372_14_19
Type: TC
Location: 30961 - 32379 (-)
Gene ID: HRGMv2_0372_14_20
Type: CAZyme
Location: 32379 - 33554 (-)
Gene ID: HRGMv2_0372_14_21
Type: CAZyme
Location: 33592 - 35925 (-)
Gene ID: HRGMv2_0372_14_22
Type: CAZyme
Location: 36127 - 37629 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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