Cluster: HRGMv2_0372_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: HRGMv2_0372
- CGC Family ID: CGCFAM_00016
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0372_2 | HRGMv2_0372_2_35 | 56115 | 58436 | - | GH20 |
| sulfatase | HRGMv2_0372_2 | HRGMv2_0372_2_36 | 58442 | 60022 | - | S1_11 |
| pfam | HRGMv2_0372_2 | HRGMv2_0372_2_37 | 60125 | 61369 | - | BT_3987-like_N | Laminin_G_3 |
| CAZyme | HRGMv2_0372_2 | HRGMv2_0372_2_38 | 61387 | 62508 | - | GH18 |
| TC | HRGMv2_0372_2 | HRGMv2_0372_2_39 | 62539 | 64122 | - | 8.A.46.2.1 |
| TC | HRGMv2_0372_2 | HRGMv2_0372_2_40 | 64138 | 67443 | - | 1.B.14.6.13 |
Gene ID: HRGMv2_0372_2_35
Type: CAZyme
Location: 56115 - 58436 (-)
Type: CAZyme
Location: 56115 - 58436 (-)
Gene ID: HRGMv2_0372_2_36
Type: sulfatase
Location: 58442 - 60022 (-)
Type: sulfatase
Location: 58442 - 60022 (-)
Gene ID: HRGMv2_0372_2_37
Type: pfam
Location: 60125 - 61369 (-)
Type: pfam
Location: 60125 - 61369 (-)
Gene ID: HRGMv2_0372_2_38
Type: CAZyme
Location: 61387 - 62508 (-)
Type: CAZyme
Location: 61387 - 62508 (-)
Gene ID: HRGMv2_0372_2_39
Type: TC
Location: 62539 - 64122 (-)
Type: TC
Location: 62539 - 64122 (-)
Gene ID: HRGMv2_0372_2_40
Type: TC
Location: 64138 - 67443 (-)
Type: TC
Location: 64138 - 67443 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp938014215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0372_2_39 | vegan > omnivore | 1.49014 | 0.03471 |
| HRGMv2_0372_2_40 | vegan > omnivore | 1.66868 | 0.02105 |