Cluster: HRGMv2_0372_CGC44
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: HRGMv2_0372
- CGC Family ID: CGCFAM_00016
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0372_23 | HRGMv2_0372_23_14 | 13865 | 17260 | + | 1.B.14.6.13 |
| TC | HRGMv2_0372_23 | HRGMv2_0372_23_15 | 17272 | 18888 | + | 8.A.46.2.2 |
| pfam | HRGMv2_0372_23 | HRGMv2_0372_23_16 | 18915 | 20075 | + | GH18_BT1044-like | GH18_BT1044-like |
| pfam | HRGMv2_0372_23 | HRGMv2_0372_23_17 | 20084 | 21277 | + | Pentaxin | BT_3987-like_N | Laminin_G_3 |
| CAZyme | HRGMv2_0372_23 | HRGMv2_0372_23_18 | 21305 | 22756 | + | GH18 |
Gene ID: HRGMv2_0372_23_14
Type: TC
Location: 13865 - 17260 (+)
Type: TC
Location: 13865 - 17260 (+)
Gene ID: HRGMv2_0372_23_15
Type: TC
Location: 17272 - 18888 (+)
Type: TC
Location: 17272 - 18888 (+)
Gene ID: HRGMv2_0372_23_16
Type: pfam
Location: 18915 - 20075 (+)
Type: pfam
Location: 18915 - 20075 (+)
Gene ID: HRGMv2_0372_23_17
Type: pfam
Location: 20084 - 21277 (+)
Type: pfam
Location: 20084 - 21277 (+)
Gene ID: HRGMv2_0372_23_18
Type: CAZyme
Location: 21305 - 22756 (+)
Type: CAZyme
Location: 21305 - 22756 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp938014215
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.