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Genome Details

Selected Rep_genome_ID: HRGMv2_0297
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola sp000432735
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_0297 3,590,921 98.88% 0.31% Luxembourg Europe HRGM
MGYG000001835 3,299,974 97.69% 0.19% Denmark Europe UHGG
Rep_522 3,867,536 98.3831% 1.05721% NA NA WIS
VatanenT_2016_SRR4305467_bin.3 3,430,653 94.42% 1.486% Russia Asia ELGG
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0297_CGC38 CGCFAM_00001 Yes 3 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0297_CGC39 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0297_CGC42 CGCFAM_00016 Yes 6 1 host glycan
HRGMv2_0297_CGC22 CGCFAM_00017 Yes 13 6 fructan
HRGMv2_0297_CGC10 CGCFAM_00025 Yes 8 2 pectin/alpha-glucan
HRGMv2_0297_CGC29 CGCFAM_00028 Yes 4 3
HRGMv2_0297_CGC24 CGCFAM_00030 Yes 8 6
HRGMv2_0297_CGC25 CGCFAM_00110 Yes 15 5 pectin/host glycan
HRGMv2_0297_CGC7 CGCFAM_00148 Yes 10 4
HRGMv2_0297_CGC17 CGCFAM_00180 Yes 12 8
HRGMv2_0297_CGC11 CGCFAM_00275 Yes 24 10
HRGMv2_0297_CGC32 CGCFAM_00321 Yes 4 1
HRGMv2_0297_CGC13 CGCFAM_00367 Yes 5 1
HRGMv2_0297_CGC36 CGCFAM_00461 Yes 9 2
HRGMv2_0297_CGC40 CGCFAM_00496 Yes 5 1
HRGMv2_0297_CGC14 CGCFAM_00577 Yes 22 12 beta-mannan/beta-glucan
HRGMv2_0297_CGC5 CGCFAM_00700 Yes 4 1
HRGMv2_0297_CGC20 CGCFAM_00719 Yes 5 2 beta-glucan
HRGMv2_0297_CGC28 CGCFAM_00755 Yes 6 1
HRGMv2_0297_CGC6 CGCFAM_01307 Yes 7 2
HRGMv2_0297_CGC35 CGCFAM_01493 Yes 8 4
HRGMv2_0297_CGC41 CGCFAM_01889 Yes 11 2
HRGMv2_0297_CGC4 CGCFAM_01914 Yes 8 1
HRGMv2_0297_CGC43 CGCFAM_01919 Yes 7 5
HRGMv2_0297_CGC12 CGCFAM_03096 Yes 6 3
Top CAZyme Families