Cluster: HRGMv2_0297_CGC11
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_00275
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0297_6 | HRGMv2_0297_6_42 | 50385 | 51287 | + | 3.A.1.105.4 |
| TC | HRGMv2_0297_6 | HRGMv2_0297_6_43 | 51284 | 52762 | + | 3.A.1.105.4 |
| TC | HRGMv2_0297_6 | HRGMv2_0297_6_44 | 52794 | 53891 | + | 3.A.1.105.4 |
| TC | HRGMv2_0297_6 | HRGMv2_0297_6_45 | 53898 | 54959 | + | 3.A.1.105.4 |
| TF | HRGMv2_0297_6 | HRGMv2_0297_6_46 | 54963 | 58994 | - | HTH_AraC |
| peptidase | HRGMv2_0297_6 | HRGMv2_0297_6_47 | 59239 | 60084 | - | S09.UNW |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_48 | 60103 | 62247 | - | GH31_1 |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_49 | 62381 | 63562 | - | GH76 |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_50 | 63582 | 65726 | - | GH92 |
| pfam | HRGMv2_0297_6 | HRGMv2_0297_6_51 | 65781 | 66470 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_52 | 66503 | 68458 | - | GH97 |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_53 | 69065 | 70192 | - | GH76 |
| pfam | HRGMv2_0297_6 | HRGMv2_0297_6_54 | 70200 | 71357 | - | SusE |
| pfam | HRGMv2_0297_6 | HRGMv2_0297_6_55 | 71388 | 73007 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0297_6 | HRGMv2_0297_6_56 | 73020 | 76169 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_57 | 76227 | 77696 | - | GH125 |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_58 | 77717 | 78883 | - | GH76 |
| pfam | HRGMv2_0297_6 | HRGMv2_0297_6_59 | 79158 | 80330 | + | Fe-ADH | ADH_Fe_C |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_60 | 80440 | 82740 | - | GH3 |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_61 | 82764 | 84122 | - | GH144 |
| pfam | HRGMv2_0297_6 | HRGMv2_0297_6_62 | 84219 | 85697 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0297_6 | HRGMv2_0297_6_63 | 85721 | 88756 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0297_6 | HRGMv2_0297_6_64 | 88917 | 91778 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0297_6 | HRGMv2_0297_6_65 | 91922 | 93655 | - | CBM32 | GH43_28 |
Gene ID: HRGMv2_0297_6_42
Type: TC
Location: 50385 - 51287 (+)
Type: TC
Location: 50385 - 51287 (+)
Gene ID: HRGMv2_0297_6_43
Type: TC
Location: 51284 - 52762 (+)
Type: TC
Location: 51284 - 52762 (+)
Gene ID: HRGMv2_0297_6_44
Type: TC
Location: 52794 - 53891 (+)
Type: TC
Location: 52794 - 53891 (+)
Gene ID: HRGMv2_0297_6_45
Type: TC
Location: 53898 - 54959 (+)
Type: TC
Location: 53898 - 54959 (+)
Gene ID: HRGMv2_0297_6_46
Type: TF
Location: 54963 - 58994 (-)
Type: TF
Location: 54963 - 58994 (-)
Gene ID: HRGMv2_0297_6_47
Type: peptidase
Location: 59239 - 60084 (-)
Type: peptidase
Location: 59239 - 60084 (-)
Gene ID: HRGMv2_0297_6_48
Type: CAZyme
Location: 60103 - 62247 (-)
Type: CAZyme
Location: 60103 - 62247 (-)
Gene ID: HRGMv2_0297_6_49
Type: CAZyme
Location: 62381 - 63562 (-)
Type: CAZyme
Location: 62381 - 63562 (-)
Gene ID: HRGMv2_0297_6_50
Type: CAZyme
Location: 63582 - 65726 (-)
Type: CAZyme
Location: 63582 - 65726 (-)
Gene ID: HRGMv2_0297_6_51
Type: pfam
Location: 65781 - 66470 (-)
Type: pfam
Location: 65781 - 66470 (-)
Gene ID: HRGMv2_0297_6_52
Type: CAZyme
Location: 66503 - 68458 (-)
Type: CAZyme
Location: 66503 - 68458 (-)
Gene ID: HRGMv2_0297_6_53
Type: CAZyme
Location: 69065 - 70192 (-)
Type: CAZyme
Location: 69065 - 70192 (-)
Gene ID: HRGMv2_0297_6_54
Type: pfam
Location: 70200 - 71357 (-)
Type: pfam
Location: 70200 - 71357 (-)
Gene ID: HRGMv2_0297_6_55
Type: pfam
Location: 71388 - 73007 (-)
Type: pfam
Location: 71388 - 73007 (-)
Gene ID: HRGMv2_0297_6_56
Type: TC
Location: 73020 - 76169 (-)
Type: TC
Location: 73020 - 76169 (-)
Gene ID: HRGMv2_0297_6_57
Type: CAZyme
Location: 76227 - 77696 (-)
Type: CAZyme
Location: 76227 - 77696 (-)
Gene ID: HRGMv2_0297_6_58
Type: CAZyme
Location: 77717 - 78883 (-)
Type: CAZyme
Location: 77717 - 78883 (-)
Gene ID: HRGMv2_0297_6_59
Type: pfam
Location: 79158 - 80330 (+)
Type: pfam
Location: 79158 - 80330 (+)
Gene ID: HRGMv2_0297_6_60
Type: CAZyme
Location: 80440 - 82740 (-)
Type: CAZyme
Location: 80440 - 82740 (-)
Gene ID: HRGMv2_0297_6_61
Type: CAZyme
Location: 82764 - 84122 (-)
Type: CAZyme
Location: 82764 - 84122 (-)
Gene ID: HRGMv2_0297_6_62
Type: pfam
Location: 84219 - 85697 (-)
Type: pfam
Location: 84219 - 85697 (-)
Gene ID: HRGMv2_0297_6_63
Type: TC
Location: 85721 - 88756 (-)
Type: TC
Location: 85721 - 88756 (-)
Gene ID: HRGMv2_0297_6_64
Type:
Location: 88917 - 91778 (-)
Type:
Location: 88917 - 91778 (-)
Gene ID: HRGMv2_0297_6_65
Type: CAZyme
Location: 91922 - 93655 (-)
Type: CAZyme
Location: 91922 - 93655 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_6_49 | vegetarian > vegan | 1.16503 | 0.03214 |
| HRGMv2_0297_6_50 | vegetarian > vegan | 1.12633 | 0.03214 |
| HRGMv2_0297_6_53 | vegetarian > vegan | 1.14034 | 0.03214 |
| HRGMv2_0297_6_54 | vegetarian > vegan | 1.11669 | 0.03214 |
| HRGMv2_0297_6_55 | vegetarian > omnivore | 1.02373 | 0.02872 |
| HRGMv2_0297_6_55 | vegetarian > vegan | 1.25604 | 0.03214 |
| HRGMv2_0297_6_56 | vegetarian > vegan | 1.03473 | 0.03214 |
| HRGMv2_0297_6_58 | vegetarian > omnivore | 1.11337 | 0.02872 |
| HRGMv2_0297_6_58 | vegetarian > vegan | 1.01921 | 0.03214 |
| HRGMv2_0297_6_61 | vegetarian > omnivore | 1.52694 | 0.02872 |
| HRGMv2_0297_6_61 | vegetarian > vegan | 1.45608 | 0.03214 |
| HRGMv2_0297_6_62 | vegetarian > omnivore | 1.06059 | 0.02872 |
| HRGMv2_0297_6_62 | vegetarian > vegan | 1.03336 | 0.03214 |
| HRGMv2_0297_6_63 | vegetarian > omnivore | 1.20676 | 0.02872 |
| HRGMv2_0297_6_63 | vegetarian > vegan | 1.16075 | 0.03214 |