Cluster: HRGMv2_0297_CGC22
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: fructan
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_00017
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0297_15 | HRGMv2_0297_15_15 | 20985 | 22499 | + | GH136 |
| CAZyme | HRGMv2_0297_15 | HRGMv2_0297_15_16 | 22520 | 23569 | + | GH43_24 |
| pfam | HRGMv2_0297_15 | HRGMv2_0297_15_17 | 23766 | 24593 | + | LGT |
| CAZyme | HRGMv2_0297_15 | HRGMv2_0297_15_18 | 25191 | 26687 | + | GH32 |
| TC | HRGMv2_0297_15 | HRGMv2_0297_15_19 | 26964 | 30068 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0297_15 | HRGMv2_0297_15_20 | 30087 | 31829 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0297_15 | HRGMv2_0297_15_21 | 31860 | 33257 | + | DUF4960 | DUF5018 |
| CAZyme | HRGMv2_0297_15 | HRGMv2_0297_15_22 | 33323 | 34897 | + | GH32 |
| CAZyme | HRGMv2_0297_15 | HRGMv2_0297_15_23 | 34917 | 36728 | + | GH32 |
| NULL(UNKNOWN) | HRGMv2_0297_15 | HRGMv2_0297_15_24 | 37026 | 39437 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0297_15 | HRGMv2_0297_15_25 | 39597 | 41474 | + | GH32 |
| NULL(UNKNOWN) | HRGMv2_0297_15 | HRGMv2_0297_15_26 | 41440 | 41595 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0297_15 | HRGMv2_0297_15_27 | 41618 | 42781 | + | 2.A.1.7.17 |
Gene ID: HRGMv2_0297_15_15
Type: CAZyme
Location: 20985 - 22499 (+)
Type: CAZyme
Location: 20985 - 22499 (+)
Gene ID: HRGMv2_0297_15_16
Type: CAZyme
Location: 22520 - 23569 (+)
Type: CAZyme
Location: 22520 - 23569 (+)
Gene ID: HRGMv2_0297_15_17
Type: pfam
Location: 23766 - 24593 (+)
Type: pfam
Location: 23766 - 24593 (+)
Gene ID: HRGMv2_0297_15_18
Type: CAZyme
Location: 25191 - 26687 (+)
Type: CAZyme
Location: 25191 - 26687 (+)
Gene ID: HRGMv2_0297_15_19
Type: TC
Location: 26964 - 30068 (+)
Type: TC
Location: 26964 - 30068 (+)
Gene ID: HRGMv2_0297_15_20
Type: pfam
Location: 30087 - 31829 (+)
Type: pfam
Location: 30087 - 31829 (+)
Gene ID: HRGMv2_0297_15_21
Type: pfam
Location: 31860 - 33257 (+)
Type: pfam
Location: 31860 - 33257 (+)
Gene ID: HRGMv2_0297_15_22
Type: CAZyme
Location: 33323 - 34897 (+)
Type: CAZyme
Location: 33323 - 34897 (+)
Gene ID: HRGMv2_0297_15_23
Type: CAZyme
Location: 34917 - 36728 (+)
Type: CAZyme
Location: 34917 - 36728 (+)
Gene ID: HRGMv2_0297_15_24
Type:
Location: 37026 - 39437 (+)
Type:
Location: 37026 - 39437 (+)
Gene ID: HRGMv2_0297_15_25
Type: CAZyme
Location: 39597 - 41474 (+)
Type: CAZyme
Location: 39597 - 41474 (+)
Gene ID: HRGMv2_0297_15_26
Type:
Location: 41440 - 41595 (-)
Type:
Location: 41440 - 41595 (-)
Gene ID: HRGMv2_0297_15_27
Type: TC
Location: 41618 - 42781 (+)
Type: TC
Location: 41618 - 42781 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_15_21 | vegetarian > vegan | 1.45593 | 0.03214 |