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Cluster: HRGMv2_0297_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0297_39 HRGMv2_0297_39_13 11732 13861 + 2.A.36.7.6
pfam HRGMv2_0297_39 HRGMv2_0297_39_14 13876 14280 + DUF2007
pfam HRGMv2_0297_39 HRGMv2_0297_39_15 14423 14725 - Acetyltransf_CG
TC HRGMv2_0297_39 HRGMv2_0297_39_16 14856 15530 + 2.A.115.2.8
TC HRGMv2_0297_39 HRGMv2_0297_39_17 15547 16287 + 9.B.158.1.1
pfam HRGMv2_0297_39 HRGMv2_0297_39_18 16500 17738 - N-glycanase_N | N-glycanase_C
CAZyme HRGMv2_0297_39 HRGMv2_0297_39_19 17836 18906 - CBM9
CAZyme HRGMv2_0297_39 HRGMv2_0297_39_20 18918 20267 - GH29
NULL(UNKNOWN) HRGMv2_0297_39 HRGMv2_0297_39_21 20454 20894 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_0297_39 HRGMv2_0297_39_22 21221 23152 - SusD-like | SusD-like | SusD-like_2 | SusD-like_2
TC HRGMv2_0297_39 HRGMv2_0297_39_23 23172 26345 - 1.B.14.6.2
Gene ID: HRGMv2_0297_39_13
Type: TC
Location: 11732 - 13861 (+)
Gene ID: HRGMv2_0297_39_14
Type: pfam
Location: 13876 - 14280 (+)
Gene ID: HRGMv2_0297_39_15
Type: pfam
Location: 14423 - 14725 (-)
Gene ID: HRGMv2_0297_39_16
Type: TC
Location: 14856 - 15530 (+)
Gene ID: HRGMv2_0297_39_17
Type: TC
Location: 15547 - 16287 (+)
Gene ID: HRGMv2_0297_39_18
Type: pfam
Location: 16500 - 17738 (-)
Gene ID: HRGMv2_0297_39_19
Type: CAZyme
Location: 17836 - 18906 (-)
Gene ID: HRGMv2_0297_39_20
Type: CAZyme
Location: 18918 - 20267 (-)
Gene ID: HRGMv2_0297_39_21
Type:
Location: 20454 - 20894 (-)
Gene ID: HRGMv2_0297_39_22
Type: pfam
Location: 21221 - 23152 (-)
Gene ID: HRGMv2_0297_39_23
Type: TC
Location: 23172 - 26345 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0297_39_16 vegetarian > omnivore 1.13964 0.02872
HRGMv2_0297_39_17 vegetarian > omnivore 1.58734 0.02872

🧭 Explore Read Mapping of CGC

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