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Cluster: HRGMv2_0297_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0297_2 HRGMv2_0297_2_66 75413 76786 - 8.A.5.1.5
STP HRGMv2_0297_2 HRGMv2_0297_2_67 76828 78327 - Fer4 | Fer4 | Fer4
TC HRGMv2_0297_2 HRGMv2_0297_2_68 78640 81120 + 9.A.8.1.6
pfam HRGMv2_0297_2 HRGMv2_0297_2_69 81130 81312 + FeoB_associated
CAZyme HRGMv2_0297_2 HRGMv2_0297_2_70 81539 82789 + GH105
pfam HRGMv2_0297_2 HRGMv2_0297_2_71 83396 83752 - DDE_Tnp_ISL3
TC HRGMv2_0297_2 HRGMv2_0297_2_72 84659 87937 + 1.B.14.6.1
TC HRGMv2_0297_2 HRGMv2_0297_2_73 87950 89392 + 8.A.46.3.2
Gene ID: HRGMv2_0297_2_66
Type: TC
Location: 75413 - 76786 (-)
Gene ID: HRGMv2_0297_2_67
Type: STP
Location: 76828 - 78327 (-)
Gene ID: HRGMv2_0297_2_68
Type: TC
Location: 78640 - 81120 (+)
Gene ID: HRGMv2_0297_2_69
Type: pfam
Location: 81130 - 81312 (+)
Gene ID: HRGMv2_0297_2_70
Type: CAZyme
Location: 81539 - 82789 (+)
Gene ID: HRGMv2_0297_2_71
Type: pfam
Location: 83396 - 83752 (-)
Gene ID: HRGMv2_0297_2_72
Type: TC
Location: 84659 - 87937 (+)
Gene ID: HRGMv2_0297_2_73
Type: TC
Location: 87950 - 89392 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0297_2_71 vegetarian > vegan 1.23281 0.03214

🧭 Explore Read Mapping of CGC

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