Cluster: HRGMv2_0297_CGC38
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_00001
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0297_30 | HRGMv2_0297_30_12 | 8021 | 11305 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0297_30 | HRGMv2_0297_30_13 | 11339 | 13477 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0297_30 | HRGMv2_0297_30_14 | 13767 | 15305 | + | GH51_1 |
Gene ID: HRGMv2_0297_30_12
Type: TC
Location: 8021 - 11305 (+)
Type: TC
Location: 8021 - 11305 (+)
Gene ID: HRGMv2_0297_30_13
Type: pfam
Location: 11339 - 13477 (+)
Type: pfam
Location: 11339 - 13477 (+)
Gene ID: HRGMv2_0297_30_14
Type: CAZyme
Location: 13767 - 15305 (+)
Type: CAZyme
Location: 13767 - 15305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_30_12 | vegetarian > omnivore | 1.12832 | 0.01448 |
| HRGMv2_0297_30_13 | vegetarian > omnivore | 1.09647 | 0.02872 |