Cluster: HRGMv2_0297_CGC14
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 12
- Substrate: beta-mannan/beta-glucan
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_00577
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0297_8 | HRGMv2_0297_8_79 | 88643 | 89998 | - | 2.A.66.1.28 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_80 | 90383 | 91489 | + | CE2 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_81 | 91520 | 92944 | + | CE20 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_82 | 93569 | 95827 | - | GH36 |
| TF | HRGMv2_0297_8 | HRGMv2_0297_8_83 | 96136 | 97026 | + | HTH_AraC |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_84 | 97191 | 98159 | + | GH5_2 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_85 | 98419 | 99726 | + | GH5_7 |
| NULL(UNKNOWN) | HRGMv2_0297_8 | HRGMv2_0297_8_86 | 99776 | 99961 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_87 | 100469 | 101863 | - | GH26 |
| pfam | HRGMv2_0297_8 | HRGMv2_0297_8_88 | 102056 | 103567 | - | SGBP_B_XBD |
| pfam | HRGMv2_0297_8 | HRGMv2_0297_8_89 | 103590 | 105299 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0297_8 | HRGMv2_0297_8_90 | 105319 | 108147 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0297_8 | HRGMv2_0297_8_91 | 108174 | 110144 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0297_8 | HRGMv2_0297_8_92 | 110157 | 113360 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_93 | 114225 | 115445 | + | GH27 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_94 | 115499 | 116461 | + | GH26 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_95 | 116756 | 117862 | + | GH26 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_96 | 117887 | 119059 | + | GH130_1 |
| TC | HRGMv2_0297_8 | HRGMv2_0297_8_97 | 119080 | 120477 | + | 2.A.2.3.6 |
| pfam | HRGMv2_0297_8 | HRGMv2_0297_8_98 | 120467 | 121663 | + | GlcNAc_2-epim |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_99 | 121787 | 124231 | + | GH2 |
| CAZyme | HRGMv2_0297_8 | HRGMv2_0297_8_100 | 124236 | 125135 | + | GH3 |
Gene ID: HRGMv2_0297_8_79
Type: TC
Location: 88643 - 89998 (-)
Type: TC
Location: 88643 - 89998 (-)
Gene ID: HRGMv2_0297_8_80
Type: CAZyme
Location: 90383 - 91489 (+)
Type: CAZyme
Location: 90383 - 91489 (+)
Gene ID: HRGMv2_0297_8_81
Type: CAZyme
Location: 91520 - 92944 (+)
Type: CAZyme
Location: 91520 - 92944 (+)
Gene ID: HRGMv2_0297_8_82
Type: CAZyme
Location: 93569 - 95827 (-)
Type: CAZyme
Location: 93569 - 95827 (-)
Gene ID: HRGMv2_0297_8_83
Type: TF
Location: 96136 - 97026 (+)
Type: TF
Location: 96136 - 97026 (+)
Gene ID: HRGMv2_0297_8_84
Type: CAZyme
Location: 97191 - 98159 (+)
Type: CAZyme
Location: 97191 - 98159 (+)
Gene ID: HRGMv2_0297_8_85
Type: CAZyme
Location: 98419 - 99726 (+)
Type: CAZyme
Location: 98419 - 99726 (+)
Gene ID: HRGMv2_0297_8_86
Type:
Location: 99776 - 99961 (+)
Type:
Location: 99776 - 99961 (+)
Gene ID: HRGMv2_0297_8_87
Type: CAZyme
Location: 100469 - 101863 (-)
Type: CAZyme
Location: 100469 - 101863 (-)
Gene ID: HRGMv2_0297_8_88
Type: pfam
Location: 102056 - 103567 (-)
Type: pfam
Location: 102056 - 103567 (-)
Gene ID: HRGMv2_0297_8_89
Type: pfam
Location: 103590 - 105299 (-)
Type: pfam
Location: 103590 - 105299 (-)
Gene ID: HRGMv2_0297_8_90
Type: TC
Location: 105319 - 108147 (-)
Type: TC
Location: 105319 - 108147 (-)
Gene ID: HRGMv2_0297_8_91
Type: pfam
Location: 108174 - 110144 (-)
Type: pfam
Location: 108174 - 110144 (-)
Gene ID: HRGMv2_0297_8_92
Type: TC
Location: 110157 - 113360 (-)
Type: TC
Location: 110157 - 113360 (-)
Gene ID: HRGMv2_0297_8_93
Type: CAZyme
Location: 114225 - 115445 (+)
Type: CAZyme
Location: 114225 - 115445 (+)
Gene ID: HRGMv2_0297_8_94
Type: CAZyme
Location: 115499 - 116461 (+)
Type: CAZyme
Location: 115499 - 116461 (+)
Gene ID: HRGMv2_0297_8_95
Type: CAZyme
Location: 116756 - 117862 (+)
Type: CAZyme
Location: 116756 - 117862 (+)
Gene ID: HRGMv2_0297_8_96
Type: CAZyme
Location: 117887 - 119059 (+)
Type: CAZyme
Location: 117887 - 119059 (+)
Gene ID: HRGMv2_0297_8_97
Type: TC
Location: 119080 - 120477 (+)
Type: TC
Location: 119080 - 120477 (+)
Gene ID: HRGMv2_0297_8_98
Type: pfam
Location: 120467 - 121663 (+)
Type: pfam
Location: 120467 - 121663 (+)
Gene ID: HRGMv2_0297_8_99
Type: CAZyme
Location: 121787 - 124231 (+)
Type: CAZyme
Location: 121787 - 124231 (+)
Gene ID: HRGMv2_0297_8_100
Type: CAZyme
Location: 124236 - 125135 (+)
Type: CAZyme
Location: 124236 - 125135 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_8_99 | vegetarian > omnivore | 1.19269 | 0.02872 |
| HRGMv2_0297_8_100 | vegan > omnivore | 1.19688 | 0.01884 |
| HRGMv2_0297_8_100 | vegetarian > omnivore | 1.25621 | 0.01047 |