Cluster: HRGMv2_0297_CGC25
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate: pectin/host glycan
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_00110
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0297_17 | HRGMv2_0297_17_24 | 36927 | 37388 | + | 9.B.27.3.3 |
| pfam | HRGMv2_0297_17 | HRGMv2_0297_17_25 | 37410 | 38066 | + | Methyltransf_30 |
| CAZyme | HRGMv2_0297_17 | HRGMv2_0297_17_26 | 38251 | 39876 | - | CBM93 | GH33 |
| CAZyme | HRGMv2_0297_17 | HRGMv2_0297_17_27 | 40016 | 43621 | - | GH2 |
| CAZyme | HRGMv2_0297_17 | HRGMv2_0297_17_28 | 43637 | 46354 | - | GH16_3 | GH29 |
| CAZyme | HRGMv2_0297_17 | HRGMv2_0297_17_29 | 46379 | 48715 | - | GH20 |
| sulfatase | HRGMv2_0297_17 | HRGMv2_0297_17_30 | 48731 | 50308 | - | S1_11 |
| pfam | HRGMv2_0297_17 | HRGMv2_0297_17_31 | 50623 | 52485 | - | SusD_RagB | SusD-like_2 | SusD-like_3 |
| TC | HRGMv2_0297_17 | HRGMv2_0297_17_32 | 52514 | 55729 | - | 1.B.14.6.1 |
| TF | HRGMv2_0297_17 | HRGMv2_0297_17_33 | 56053 | 60006 | + | HTH_AraC |
| pfam | HRGMv2_0297_17 | HRGMv2_0297_17_34 | 60049 | 60906 | + | ZnuA |
| TC | HRGMv2_0297_17 | HRGMv2_0297_17_35 | 60914 | 61681 | + | 3.A.1.15.1 |
| pfam | HRGMv2_0297_17 | HRGMv2_0297_17_36 | 61907 | 65242 | + | TMEM260-like |
| CAZyme | HRGMv2_0297_17 | HRGMv2_0297_17_37 | 65359 | 65970 | + | CE4 |
| TC | HRGMv2_0297_17 | HRGMv2_0297_17_38 | 66143 | 68533 | + | 1.B.14.3.6 |
Gene ID: HRGMv2_0297_17_24
Type: TC
Location: 36927 - 37388 (+)
Type: TC
Location: 36927 - 37388 (+)
Gene ID: HRGMv2_0297_17_25
Type: pfam
Location: 37410 - 38066 (+)
Type: pfam
Location: 37410 - 38066 (+)
Gene ID: HRGMv2_0297_17_26
Type: CAZyme
Location: 38251 - 39876 (-)
Type: CAZyme
Location: 38251 - 39876 (-)
Gene ID: HRGMv2_0297_17_27
Type: CAZyme
Location: 40016 - 43621 (-)
Type: CAZyme
Location: 40016 - 43621 (-)
Gene ID: HRGMv2_0297_17_28
Type: CAZyme
Location: 43637 - 46354 (-)
Type: CAZyme
Location: 43637 - 46354 (-)
Gene ID: HRGMv2_0297_17_29
Type: CAZyme
Location: 46379 - 48715 (-)
Type: CAZyme
Location: 46379 - 48715 (-)
Gene ID: HRGMv2_0297_17_30
Type: sulfatase
Location: 48731 - 50308 (-)
Type: sulfatase
Location: 48731 - 50308 (-)
Gene ID: HRGMv2_0297_17_31
Type: pfam
Location: 50623 - 52485 (-)
Type: pfam
Location: 50623 - 52485 (-)
Gene ID: HRGMv2_0297_17_32
Type: TC
Location: 52514 - 55729 (-)
Type: TC
Location: 52514 - 55729 (-)
Gene ID: HRGMv2_0297_17_33
Type: TF
Location: 56053 - 60006 (+)
Type: TF
Location: 56053 - 60006 (+)
Gene ID: HRGMv2_0297_17_34
Type: pfam
Location: 60049 - 60906 (+)
Type: pfam
Location: 60049 - 60906 (+)
Gene ID: HRGMv2_0297_17_35
Type: TC
Location: 60914 - 61681 (+)
Type: TC
Location: 60914 - 61681 (+)
Gene ID: HRGMv2_0297_17_36
Type: pfam
Location: 61907 - 65242 (+)
Type: pfam
Location: 61907 - 65242 (+)
Gene ID: HRGMv2_0297_17_37
Type: CAZyme
Location: 65359 - 65970 (+)
Type: CAZyme
Location: 65359 - 65970 (+)
Gene ID: HRGMv2_0297_17_38
Type: TC
Location: 66143 - 68533 (+)
Type: TC
Location: 66143 - 68533 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_17_24 | vegetarian > omnivore | 1.00888 | 0.02872 |
| HRGMv2_0297_17_29 | vegetarian > omnivore | 1.03982 | 0.02872 |
| HRGMv2_0297_17_31 | vegetarian > omnivore | 1.16297 | 0.02872 |
| HRGMv2_0297_17_31 | vegetarian > vegan | 1.36214 | 0.03214 |
| HRGMv2_0297_17_32 | vegetarian > vegan | 1.14821 | 0.03214 |
| HRGMv2_0297_17_37 | vegetarian > omnivore | 1.65458 | 0.02872 |