Cluster: HRGMv2_0297_CGC36
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_00461
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0297_27 | HRGMv2_0297_27_6 | 11244 | 12797 | - | 8.A.46.1.6 |
| TC | HRGMv2_0297_27 | HRGMv2_0297_27_7 | 12812 | 15883 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0297_27 | HRGMv2_0297_27_8 | 15899 | 17623 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0297_27 | HRGMv2_0297_27_9 | 17626 | 18882 | - | 2.A.1.33.2 |
| CAZyme | HRGMv2_0297_27 | HRGMv2_0297_27_10 | 18882 | 19934 | - | GH130_4 |
| NULL(UNKNOWN) | HRGMv2_0297_27 | HRGMv2_0297_27_11 | 20006 | 20170 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0297_27 | HRGMv2_0297_27_12 | 20308 | 22416 | - | GH97 |
| pfam | HRGMv2_0297_27 | HRGMv2_0297_27_13 | 22699 | 23139 | + | DUF3836 |
| TC | HRGMv2_0297_27 | HRGMv2_0297_27_14 | 23156 | 23971 | + | 9.B.2.1.5 |
Gene ID: HRGMv2_0297_27_6
Type: TC
Location: 11244 - 12797 (-)
Type: TC
Location: 11244 - 12797 (-)
Gene ID: HRGMv2_0297_27_7
Type: TC
Location: 12812 - 15883 (-)
Type: TC
Location: 12812 - 15883 (-)
Gene ID: HRGMv2_0297_27_8
Type:
Location: 15899 - 17623 (-)
Type:
Location: 15899 - 17623 (-)
Gene ID: HRGMv2_0297_27_9
Type: TC
Location: 17626 - 18882 (-)
Type: TC
Location: 17626 - 18882 (-)
Gene ID: HRGMv2_0297_27_10
Type: CAZyme
Location: 18882 - 19934 (-)
Type: CAZyme
Location: 18882 - 19934 (-)
Gene ID: HRGMv2_0297_27_11
Type:
Location: 20006 - 20170 (-)
Type:
Location: 20006 - 20170 (-)
Gene ID: HRGMv2_0297_27_12
Type: CAZyme
Location: 20308 - 22416 (-)
Type: CAZyme
Location: 20308 - 22416 (-)
Gene ID: HRGMv2_0297_27_13
Type: pfam
Location: 22699 - 23139 (+)
Type: pfam
Location: 22699 - 23139 (+)
Gene ID: HRGMv2_0297_27_14
Type: TC
Location: 23156 - 23971 (+)
Type: TC
Location: 23156 - 23971 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_27_6 | vegetarian > omnivore | 1.38254 | 0.02872 |
| HRGMv2_0297_27_7 | vegetarian > omnivore | 1.30971 | 0.02872 |
| HRGMv2_0297_27_8 | vegetarian > omnivore | 1.25826 | 0.02872 |
| HRGMv2_0297_27_9 | vegetarian > omnivore | 1.28541 | 0.02872 |
| HRGMv2_0297_27_9 | vegetarian > vegan | 1.12942 | 0.03214 |
| HRGMv2_0297_27_14 | vegetarian > vegan | 1.02058 | 0.03214 |