Cluster: HRGMv2_0297_CGC42
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_00016
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0297_45 | HRGMv2_0297_45_2 | 1606 | 2703 | - | GH18 |
| TC | HRGMv2_0297_45 | HRGMv2_0297_45_3 | 2729 | 4351 | - | 8.A.46.2.2 |
| TC | HRGMv2_0297_45 | HRGMv2_0297_45_4 | 4370 | 7705 | - | 1.B.14.6.13 |
| STP | HRGMv2_0297_45 | HRGMv2_0297_45_5 | 7869 | 8861 | - | FecR |
| TF | HRGMv2_0297_45 | HRGMv2_0297_45_6 | 8943 | 9515 | - | GerE |
| TC | HRGMv2_0297_45 | HRGMv2_0297_45_7 | 9716 | 12436 | + | 1.B.14.6.13 |
Gene ID: HRGMv2_0297_45_2
Type: CAZyme
Location: 1606 - 2703 (-)
Type: CAZyme
Location: 1606 - 2703 (-)
Gene ID: HRGMv2_0297_45_3
Type: TC
Location: 2729 - 4351 (-)
Type: TC
Location: 2729 - 4351 (-)
Gene ID: HRGMv2_0297_45_4
Type: TC
Location: 4370 - 7705 (-)
Type: TC
Location: 4370 - 7705 (-)
Gene ID: HRGMv2_0297_45_5
Type: STP
Location: 7869 - 8861 (-)
Type: STP
Location: 7869 - 8861 (-)
Gene ID: HRGMv2_0297_45_6
Type: TF
Location: 8943 - 9515 (-)
Type: TF
Location: 8943 - 9515 (-)
Gene ID: HRGMv2_0297_45_7
Type: TC
Location: 9716 - 12436 (+)
Type: TC
Location: 9716 - 12436 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_45_3 | vegetarian > omnivore | 1.11232 | 0.02872 |