Cluster: HRGMv2_0297_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: beta-glucan
- Genome ID: HRGMv2_0297
- CGC Family ID: CGCFAM_00719
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0297_12 | HRGMv2_0297_12_73 | 87496 | 88329 | + | GH16_3 |
| TC | HRGMv2_0297_12 | HRGMv2_0297_12_74 | 88347 | 91538 | + | 1.B.14.6.2 |
| TC | HRGMv2_0297_12 | HRGMv2_0297_12_75 | 91576 | 93258 | + | 8.A.46.2.1 |
| NULL(UNKNOWN) | HRGMv2_0297_12 | HRGMv2_0297_12_76 | 93284 | 94540 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0297_12 | HRGMv2_0297_12_77 | 94557 | 96884 | + | GH3 |
Gene ID: HRGMv2_0297_12_73
Type: CAZyme
Location: 87496 - 88329 (+)
Type: CAZyme
Location: 87496 - 88329 (+)
Gene ID: HRGMv2_0297_12_74
Type: TC
Location: 88347 - 91538 (+)
Type: TC
Location: 88347 - 91538 (+)
Gene ID: HRGMv2_0297_12_75
Type: TC
Location: 91576 - 93258 (+)
Type: TC
Location: 91576 - 93258 (+)
Gene ID: HRGMv2_0297_12_76
Type:
Location: 93284 - 94540 (+)
Type:
Location: 93284 - 94540 (+)
Gene ID: HRGMv2_0297_12_77
Type: CAZyme
Location: 94557 - 96884 (+)
Type: CAZyme
Location: 94557 - 96884 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola sp000432735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0297_12_75 | vegetarian > omnivore | 1.37394 | 0.02872 |
| HRGMv2_0297_12_75 | vegetarian > vegan | 1.04251 | 0.03214 |