Genome Details
Selected Rep_genome_ID: HRGMv2_0140
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_0140 | 2,796,746 | 98.99% | 0.641% | UK | Europe | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0140_CGC35 | CGCFAM_00221 | Yes | 5 | 3 | |
| HRGMv2_0140_CGC5 | CGCFAM_02706 | Yes | 6 | 1 | |
| HRGMv2_0140_CGC34 | CGCFAM_02707 | Yes | 3 | 1 | |
| HRGMv2_0140_CGC19 | CGCFAM_05163 | Yes | 4 | 1 | |
| HRGMv2_0140_CGC30 | CGCFAM_05185 | Yes | 7 | 2 | |
| HRGMv2_0140_CGC16 | CGCFAM_05186 | Yes | 4 | 1 | |
| HRGMv2_0140_CGC31 | CGCFAM_05940 | Yes | 5 | 2 | |
| HRGMv2_0140_CGC2 | CGCFAM_06554 | Yes | 14 | 1 | |
| HRGMv2_0140_CGC4 | CGCFAM_07882 | Yes | 14 | 5 | |
| HRGMv2_0140_CGC22 | CGCFAM_07883 | Yes | 4 | 1 | |
| HRGMv2_0140_CGC23 | CGCFAM_07884 | Yes | 9 | 5 | |
| HRGMv2_0140_CGC28 | CGCFAM_07885 | Yes | 4 | 1 | |
| HRGMv2_0140_CGC10 | CGCFAM_07886 | Yes | 6 | 1 | |
| HRGMv2_0140_CGC33 | CGCFAM_07887 | Yes | 4 | 1 | |
| HRGMv2_0140_CGC29 | CGCFAM_07889 | Yes | 7 | 2 | |
| HRGMv2_0140_CGC11 | CGCFAM_07890 | Yes | 17 | 10 |
Top CAZyme Families