Cluster: HRGMv2_0140_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_05185
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_71 | HRGMv2_0140_71_2 | 1061 | 3454 | - | 3.A.11.3.1 |
| TC | HRGMv2_0140_71 | HRGMv2_0140_71_3 | 3618 | 4511 | + | 2.A.115.1.1 |
| STP | HRGMv2_0140_71 | HRGMv2_0140_71_4 | 4924 | 5754 | + | Pribosyltran |
| pfam | HRGMv2_0140_71 | HRGMv2_0140_71_5 | 6000 | 6173 | + | Hc1 |
| CAZyme | HRGMv2_0140_71 | HRGMv2_0140_71_6 | 6249 | 8363 | - | PL33 |
| CAZyme | HRGMv2_0140_71 | HRGMv2_0140_71_7 | 8492 | 10636 | - | GH141 |
| TC | HRGMv2_0140_71 | HRGMv2_0140_71_8 | 10987 | 14490 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_0140_71_2
Type: TC
Location: 1061 - 3454 (-)
Type: TC
Location: 1061 - 3454 (-)
Gene ID: HRGMv2_0140_71_3
Type: TC
Location: 3618 - 4511 (+)
Type: TC
Location: 3618 - 4511 (+)
Gene ID: HRGMv2_0140_71_4
Type: STP
Location: 4924 - 5754 (+)
Type: STP
Location: 4924 - 5754 (+)
Gene ID: HRGMv2_0140_71_5
Type: pfam
Location: 6000 - 6173 (+)
Type: pfam
Location: 6000 - 6173 (+)
Gene ID: HRGMv2_0140_71_6
Type: CAZyme
Location: 6249 - 8363 (-)
Type: CAZyme
Location: 6249 - 8363 (-)
Gene ID: HRGMv2_0140_71_7
Type: CAZyme
Location: 8492 - 10636 (-)
Type: CAZyme
Location: 8492 - 10636 (-)
Gene ID: HRGMv2_0140_71_8
Type: TC
Location: 10987 - 14490 (+)
Type: TC
Location: 10987 - 14490 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_71_3 | vegetarian > omnivore | 1.45760 | 0.00180 |
| HRGMv2_0140_71_4 | vegetarian > omnivore | 1.64804 | 0.00180 |
| HRGMv2_0140_71_6 | vegetarian > omnivore | 1.61985 | 0.00180 |
| HRGMv2_0140_71_7 | vegetarian > omnivore | 1.20268 | 0.00180 |