Cluster: HRGMv2_0140_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_02706
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_6 | HRGMv2_0140_6_23 | 23139 | 24440 | + | 2.A.13.1.3 |
| NULL(UNKNOWN) | HRGMv2_0140_6 | HRGMv2_0140_6_24 | 24356 | 24538 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0140_6 | HRGMv2_0140_6_25 | 24612 | 25439 | - | Ion_trans | Ion_trans_2 |
| TC | HRGMv2_0140_6 | HRGMv2_0140_6_26 | 25600 | 27900 | - | 1.B.14.10.1 |
| CAZyme | HRGMv2_0140_6 | HRGMv2_0140_6_27 | 28022 | 28702 | + | GH25 |
| TC | HRGMv2_0140_6 | HRGMv2_0140_6_28 | 28702 | 30285 | + | 3.D.10.1.6 |
Gene ID: HRGMv2_0140_6_23
Type: TC
Location: 23139 - 24440 (+)
Type: TC
Location: 23139 - 24440 (+)
Gene ID: HRGMv2_0140_6_24
Type:
Location: 24356 - 24538 (-)
Type:
Location: 24356 - 24538 (-)
Gene ID: HRGMv2_0140_6_25
Type: pfam
Location: 24612 - 25439 (-)
Type: pfam
Location: 24612 - 25439 (-)
Gene ID: HRGMv2_0140_6_26
Type: TC
Location: 25600 - 27900 (-)
Type: TC
Location: 25600 - 27900 (-)
Gene ID: HRGMv2_0140_6_27
Type: CAZyme
Location: 28022 - 28702 (+)
Type: CAZyme
Location: 28022 - 28702 (+)
Gene ID: HRGMv2_0140_6_28
Type: TC
Location: 28702 - 30285 (+)
Type: TC
Location: 28702 - 30285 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_6_26 | vegetarian > omnivore | 1.28525 | 0.00180 |
| HRGMv2_0140_6_27 | vegetarian > omnivore | 1.07287 | 0.00180 |