Cluster: HRGMv2_0140_CGC28
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_07885
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_68 | HRGMv2_0140_68_2 | 1470 | 3767 | - | GH139 |
| sulfatase | HRGMv2_0140_68 | HRGMv2_0140_68_3 | 3874 | 4617 | - | S1_20 |
| TC | HRGMv2_0140_68 | HRGMv2_0140_68_4 | 4670 | 6097 | - | 1.A.23.4.5 |
| TC | HRGMv2_0140_68 | HRGMv2_0140_68_5 | 6213 | 7202 | - | 1.B.57.4.3 |
Gene ID: HRGMv2_0140_68_2
Type: CAZyme
Location: 1470 - 3767 (-)
Type: CAZyme
Location: 1470 - 3767 (-)
Gene ID: HRGMv2_0140_68_3
Type: sulfatase
Location: 3874 - 4617 (-)
Type: sulfatase
Location: 3874 - 4617 (-)
Gene ID: HRGMv2_0140_68_4
Type: TC
Location: 4670 - 6097 (-)
Type: TC
Location: 4670 - 6097 (-)
Gene ID: HRGMv2_0140_68_5
Type: TC
Location: 6213 - 7202 (-)
Type: TC
Location: 6213 - 7202 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_68_2 | vegan > omnivore | 1.23619 | 0.01548 |
| HRGMv2_0140_68_2 | vegetarian > omnivore | 1.75925 | 0.00180 |
| HRGMv2_0140_68_3 | vegetarian > omnivore | 1.07966 | 0.00180 |
| HRGMv2_0140_68_5 | vegetarian > omnivore | 1.41468 | 0.00180 |