Cluster: HRGMv2_0140_CGC34
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_02707
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_103 | HRGMv2_0140_103_2 | 1715 | 3184 | + | 1.I.1.1.3 |
| CAZyme | HRGMv2_0140_103 | HRGMv2_0140_103_3 | 3636 | 6098 | + | GH3 |
| TC | HRGMv2_0140_103 | HRGMv2_0140_103_4 | 6238 | 6900 | + | 9.B.20.1.4 |
Gene ID: HRGMv2_0140_103_2
Type: TC
Location: 1715 - 3184 (+)
Type: TC
Location: 1715 - 3184 (+)
Gene ID: HRGMv2_0140_103_3
Type: CAZyme
Location: 3636 - 6098 (+)
Type: CAZyme
Location: 3636 - 6098 (+)
Gene ID: HRGMv2_0140_103_4
Type: TC
Location: 6238 - 6900 (+)
Type: TC
Location: 6238 - 6900 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_103_3 | vegan > omnivore | 2.09099 | 0.01548 |
| HRGMv2_0140_103_3 | vegetarian > omnivore | 1.69749 | 0.00180 |
| HRGMv2_0140_103_4 | vegetarian > omnivore | 1.60639 | 0.00180 |
| HRGMv2_0140_103_4 | vegetarian > vegan | 1.16324 | 0.01226 |