Cluster: HRGMv2_0140_CGC35
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_00221
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_114 | HRGMv2_0140_114_4 | 2387 | 3829 | + | 2.A.66.2.23 |
| CAZyme | HRGMv2_0140_114 | HRGMv2_0140_114_5 | 3826 | 4872 | + | GT2 |
| CAZyme | HRGMv2_0140_114 | HRGMv2_0140_114_6 | 4873 | 5850 | + | GT92 |
| pfam | HRGMv2_0140_114 | HRGMv2_0140_114_7 | 5858 | 6988 | + | EpsG |
| CAZyme | HRGMv2_0140_114 | HRGMv2_0140_114_8 | 6992 | 7645 | + | GT2 |
Gene ID: HRGMv2_0140_114_4
Type: TC
Location: 2387 - 3829 (+)
Type: TC
Location: 2387 - 3829 (+)
Gene ID: HRGMv2_0140_114_5
Type: CAZyme
Location: 3826 - 4872 (+)
Type: CAZyme
Location: 3826 - 4872 (+)
Gene ID: HRGMv2_0140_114_6
Type: CAZyme
Location: 4873 - 5850 (+)
Type: CAZyme
Location: 4873 - 5850 (+)
Gene ID: HRGMv2_0140_114_7
Type: pfam
Location: 5858 - 6988 (+)
Type: pfam
Location: 5858 - 6988 (+)
Gene ID: HRGMv2_0140_114_8
Type: CAZyme
Location: 6992 - 7645 (+)
Type: CAZyme
Location: 6992 - 7645 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_114_4 | vegetarian > omnivore | 1.53728 | 0.00180 |
| HRGMv2_0140_114_4 | vegetarian > vegan | 3.14425 | 0.01226 |
| HRGMv2_0140_114_5 | vegetarian > omnivore | 2.00605 | 0.00180 |
| HRGMv2_0140_114_5 | vegetarian > vegan | 3.67016 | 0.01226 |
| HRGMv2_0140_114_6 | vegetarian > omnivore | 1.44460 | 0.00180 |
| HRGMv2_0140_114_6 | vegetarian > vegan | 3.55151 | 0.01226 |
| HRGMv2_0140_114_7 | vegetarian > omnivore | 1.61726 | 0.00180 |
| HRGMv2_0140_114_7 | vegetarian > vegan | 3.59631 | 0.01226 |
| HRGMv2_0140_114_8 | vegetarian > omnivore | 1.79789 | 0.00180 |