Cluster: HRGMv2_0140_CGC4
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_07882
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_4 | HRGMv2_0140_4_28 | 32868 | 34031 | - | 2.A.1.7.16 |
| pfam | HRGMv2_0140_4 | HRGMv2_0140_4_29 | 34582 | 36669 | + | ATP-cone | NRDD |
| NULL(UNKNOWN) | HRGMv2_0140_4 | HRGMv2_0140_4_30 | 36662 | 37132 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0140_4 | HRGMv2_0140_4_31 | 37348 | 38829 | + | GH29 |
| pfam | HRGMv2_0140_4 | HRGMv2_0140_4_32 | 39209 | 40201 | + | EamA | EamA |
| CAZyme | HRGMv2_0140_4 | HRGMv2_0140_4_33 | 40278 | 41249 | - | GT90 |
| CAZyme | HRGMv2_0140_4 | HRGMv2_0140_4_34 | 42239 | 43063 | - | GT111 |
| pfam | HRGMv2_0140_4 | HRGMv2_0140_4_35 | 43081 | 44175 | - | GLF | NAD_binding_8 |
| pfam | HRGMv2_0140_4 | HRGMv2_0140_4_36 | 44390 | 45766 | + | DUF4861 |
| CAZyme | HRGMv2_0140_4 | HRGMv2_0140_4_37 | 46006 | 47895 | + | PL35 |
| CAZyme | HRGMv2_0140_4 | HRGMv2_0140_4_38 | 47924 | 49180 | + | GH88 |
| pfam | HRGMv2_0140_4 | HRGMv2_0140_4_39 | 49349 | 49771 | - | TsaE |
| STP | HRGMv2_0140_4 | HRGMv2_0140_4_40 | 49932 | 51488 | - | PglZ | Response_reg |
| TC | HRGMv2_0140_4 | HRGMv2_0140_4_41 | 51725 | 54547 | + | 1.B.14.12.3 |
Gene ID: HRGMv2_0140_4_28
Type: TC
Location: 32868 - 34031 (-)
Type: TC
Location: 32868 - 34031 (-)
Gene ID: HRGMv2_0140_4_29
Type: pfam
Location: 34582 - 36669 (+)
Type: pfam
Location: 34582 - 36669 (+)
Gene ID: HRGMv2_0140_4_30
Type:
Location: 36662 - 37132 (+)
Type:
Location: 36662 - 37132 (+)
Gene ID: HRGMv2_0140_4_31
Type: CAZyme
Location: 37348 - 38829 (+)
Type: CAZyme
Location: 37348 - 38829 (+)
Gene ID: HRGMv2_0140_4_32
Type: pfam
Location: 39209 - 40201 (+)
Type: pfam
Location: 39209 - 40201 (+)
Gene ID: HRGMv2_0140_4_33
Type: CAZyme
Location: 40278 - 41249 (-)
Type: CAZyme
Location: 40278 - 41249 (-)
Gene ID: HRGMv2_0140_4_34
Type: CAZyme
Location: 42239 - 43063 (-)
Type: CAZyme
Location: 42239 - 43063 (-)
Gene ID: HRGMv2_0140_4_35
Type: pfam
Location: 43081 - 44175 (-)
Type: pfam
Location: 43081 - 44175 (-)
Gene ID: HRGMv2_0140_4_36
Type: pfam
Location: 44390 - 45766 (+)
Type: pfam
Location: 44390 - 45766 (+)
Gene ID: HRGMv2_0140_4_37
Type: CAZyme
Location: 46006 - 47895 (+)
Type: CAZyme
Location: 46006 - 47895 (+)
Gene ID: HRGMv2_0140_4_38
Type: CAZyme
Location: 47924 - 49180 (+)
Type: CAZyme
Location: 47924 - 49180 (+)
Gene ID: HRGMv2_0140_4_39
Type: pfam
Location: 49349 - 49771 (-)
Type: pfam
Location: 49349 - 49771 (-)
Gene ID: HRGMv2_0140_4_40
Type: STP
Location: 49932 - 51488 (-)
Type: STP
Location: 49932 - 51488 (-)
Gene ID: HRGMv2_0140_4_41
Type: TC
Location: 51725 - 54547 (+)
Type: TC
Location: 51725 - 54547 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_4_28 | vegetarian > omnivore | 1.27049 | 0.00180 |
| HRGMv2_0140_4_30 | vegetarian > omnivore | 1.26961 | 0.00180 |
| HRGMv2_0140_4_30 | vegetarian > vegan | 1.13718 | 0.01226 |
| HRGMv2_0140_4_31 | vegetarian > omnivore | 1.11467 | 0.00180 |
| HRGMv2_0140_4_32 | vegetarian > omnivore | 1.25918 | 0.00180 |
| HRGMv2_0140_4_33 | vegetarian > omnivore | 1.45229 | 0.00180 |
| HRGMv2_0140_4_34 | vegan > omnivore | 1.30959 | 0.01548 |
| HRGMv2_0140_4_34 | vegetarian > omnivore | 1.65007 | 0.00180 |
| HRGMv2_0140_4_35 | vegan > omnivore | 1.44182 | 0.01548 |
| HRGMv2_0140_4_35 | vegetarian > omnivore | 1.74239 | 0.00180 |
| HRGMv2_0140_4_36 | vegetarian > omnivore | 1.25808 | 0.00180 |
| HRGMv2_0140_4_37 | vegetarian > omnivore | 1.52883 | 0.00180 |
| HRGMv2_0140_4_37 | vegan > omnivore | 1.03384 | 0.01548 |
| HRGMv2_0140_4_39 | vegetarian > omnivore | 2.24057 | 0.00180 |
| HRGMv2_0140_4_39 | vegan > omnivore | 1.86749 | 0.01548 |